Q7ZUX5 (Q7ZUX5_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA terminal phosphate cyclase domain 1 Ensembl ENSDARP00000023892 EMBL AAH46087.1

Submitted name:
RTC domain containing 1 EMBL AAQ97842.1

Gene names

Name:	rtcd1 ZFIN ZDB-GENE-030131-9687 Ensembl ENSDARP00000023892 EMBL AAH46087.1
Synonyms:	RTCD1 EMBL AAQ97842.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH46087.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	363 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro
Molecular function	RNA-3'-phosphate cyclase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7ZUX5 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 52B3D5C3A15B30E8	FASTA	363	38,766
	10 20 30 40 50 60 MAATTFEMDG SVMEGGGQIL RVSAALSCIQ GASIKINKIR AGRSTPGLRP QHLSGLELLR 70 80 90 100 110 120 DMCNGNLEGA TVGSSEITLT PGKIKGGNHI ADTHTAGSVT LLMQVSLPCA LFAQGPSELC 130 140 150 160 170 180 LKGGTNAEMA PQIDYTVKVF KPIVERFGVQ FDCDLRMRGY YPKGGGEVVL KVNPAKELSP 190 200 210 220 230 240 INMTERGNIT KIYGRAFVAG VLPFKLAKDM STAAIRTIRK EIKDLYINIQ SLQEKDKACG 250 260 270 280 290 300 NGNGIIIIAE SSTGCIFAGS SLGKKGVYAD KVGIEAAEML LRNIRHNGCV DEFLQDQLII 310 320 330 340 350 360 FMALANGTSR MRTGPITLHT QTAIHVAEQL TNAKFAISKA EDENANDTYI IECQGVGATN PSL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Hematopoietic gene expression profile in zebrafish kidney marrow." Song H.-D., Sun X.-J., Deng M., Zhang G.-W., Zhou Y., Wu X.-Y., Sheng Y., Chen Y., Ruan Z., Jiang C.-L., Fan H.-Y., Zon L.I., Kanki J.P., Liu T.X., Look A.T., Chen Z. Proc. Natl. Acad. Sci. U.S.A. 101:16240-16245(2004) [PubMed: 15520368] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Kidney marrow EMBL AAQ97842.1.
[2]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Whole body EMBL AAH46087.1.
[3]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000023892.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000023892.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR751228 Genomic DNA. No translation available. BC046087 mRNA. Translation: AAH46087.1. AY398409 mRNA. Translation: AAQ97842.1.
IPI	IPI00501190.
RefSeq	NP_955830.1. NM_199536.2.
UniGene	Dr.104448.
3D structure databases
HSSP	HSSP built from PDB template 1QMH based on UniProtKB P46849.
ProteinModelPortal	Q7ZUX5.
ModBase	Search...
Protein-protein interaction databases
STRING	Q7ZUX5.
Proteomic databases
PRIDE	Q7ZUX5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000021666; ENSDARP00000023892; ENSDARG00000002215.
GeneID	321129.
KEGG	dre:321129.
Organism-specific databases
CTD	8634.
ZFIN	ZDB-GENE-030131-9687. rtcd1.
Phylogenomic databases
eggNOG	fiNOG11652.
GeneTree	ENSGT00530000063404.
HOGENOM	HBG683539.
HOVERGEN	HBG017761.
InParanoid	Q7ZUX5.
OMA	GGTDVAW.
OrthoDB	EOG4DR9CM.
PhylomeDB	Q7ZUX5.
Gene expression databases
ArrayExpress	Q7ZUX5.
Bgee	Q7ZUX5.
Family and domain databases
InterPro	IPR013791. RNA3'-term_phos_cycl_insert. IPR023797. RNA3'_phos_cyclase_dom. IPR000228. RNA3'_term_phos_cyc. IPR017770. RNA3'_term_phos_cyc_type_1. IPR020719. RNA3'_term_phos_cycl-like_CS. IPR013796. RNA3'_term_phos_cycl_insert. IPR013792. RNA3'P_cycl/enolpyr_Trfase_a/b. [Graphical view]
Gene3D	G3DSA:3.30.360.20. G3DSA:3.30.360.20. 1 hit. G3DSA:3.65.10.20. RNA3'_term_phos_cycl. 2 hits.
KO	K01974.
PANTHER	PTHR11096. RNA3'_term_phos_cycl. 1 hit.
Pfam	PF01137. RTC. 1 hit. PF05189. RTC_insert. 1 hit. [Graphical view]
PIRSF	PIRSF005378. RNA3'_term_phos_cycl_euk. 1 hit.
SUPFAM	SSF52913. RNA3'-term_phos_cycl_insert. 1 hit. SSF55205. RNA3'_cycl/enolpyr_transf_A/B. 2 hits.
TIGRFAMs	TIGR03399. RNA_3prim_cycl. 1 hit.
PROSITE	PS01287. RTC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7ZUX5_DANRE

Accession

Primary (citable) accession number: Q7ZUX5

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	January 25, 2012
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)