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Protein
Submitted name:

GAD67

Gene

gad1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

ReactomeiREACT_320346. GABA synthesis.
REACT_343246. GABA synthesis, release, reuptake and degradation.

Names & Taxonomyi

Protein namesi
Submitted name:
GAD67Imported
Submitted name:
Glutamate decarboxylase 1Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:gad1bImported
Synonyms:gad1Imported, GAD67Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 6

Organism-specific databases

ZFINiZDB-GENE-030909-3. gad1b.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000110348.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
GeneTreeiENSGT00760000119205.
HOGENOMiHOG000005382.
HOVERGENiHBG004980.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7ZUS3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSAPSSSA GDMDPNTANL RQPATTSDAW YGVAHGCTRK LGMKICGFLQ
60 70 80 90 100
KNNSLDEKSR MVGSFKESAK NQMSCDNNER FTRDETDFSN LFARDLLPAK
110 120 130 140 150
NGEEPTIQFL LEVVEILTNY VRKTFDRSTK VLDFHHPHQL LEGMEGFNLE
160 170 180 190 200
LSDQPESLEQ ILVDCRDTLK YGVRTGHPRF FNQLSSGLDI IGLAGEWLTS
210 220 230 240 250
TANTNMFTYE IAPVFVLMEQ LTLKKMREII GWPNGDGDAL FSPGGAISNM
260 270 280 290 300
YSVMVARYKY FPEVKTKGMS AAPRLVLFTS EHSHYSIKKA GAVLGFGKEN
310 320 330 340 350
VILLKTDERG RVIPADLEAK VIDAKQKGYV PLFVNATAGT TVYGAFDPIN
360 370 380 390 400
DIADICEKYN LWLHVDGAWG GGLLMSRKHR HKLSGIERAN SVTWNPHKMM
410 420 430 440 450
GVPLQCSAIL VREKGILQGC NSMCAGYLFQ PDKQYDVTYD TGDKAIQCGR
460 470 480 490 500
HVDIFKFWLM WKAKGTIGFE QHIDRCLELS EYLYNKIKNR EGYEMVFEGQ
510 520 530 540 550
PQHTNVCFWY IPPSLRGMPN GDERREKLHR VAPKIKAMMM ECGTTMVGYQ
560 570 580
PQGDKVNFFR MVVSNHAVTK SDIDFLIDEI ERLGQDL
Length:587
Mass (Da):66,156
Last modified:June 1, 2003 - v1
Checksum:i1CF1FB099242491E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR384078 Genomic DNA. No translation available.
BC047851 mRNA. Translation: AAH47851.1.
AB183390 mRNA. Translation: BAD67441.1.
RefSeqiNP_919400.1. NM_194419.1.
XP_009300378.1. XM_009302103.1.
UniGeneiDr.81985.

Genome annotation databases

EnsembliENSDART00000003008; ENSDARP00000024162; ENSDARG00000027419.
GeneIDi378441.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR384078 Genomic DNA. No translation available.
BC047851 mRNA. Translation: AAH47851.1.
AB183390 mRNA. Translation: BAD67441.1.
RefSeqiNP_919400.1. NM_194419.1.
XP_009300378.1. XM_009302103.1.
UniGeneiDr.81985.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000110348.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000003008; ENSDARP00000024162; ENSDARG00000027419.
GeneIDi378441.

Organism-specific databases

CTDi378441.
ZFINiZDB-GENE-030909-3. gad1b.

Phylogenomic databases

eggNOGiCOG0076.
GeneTreeiENSGT00760000119205.
HOGENOMiHOG000005382.
HOVERGENiHBG004980.

Enzyme and pathway databases

ReactomeiREACT_320346. GABA synthesis.
REACT_343246. GABA synthesis, release, reuptake and degradation.

Miscellaneous databases

NextBioi20813769.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Whole bodyImported.
  2. "Distribution of prospective glutamatergic, glycinergic, and GABAergic neurons in embryonic and larval zebrafish."
    Higashijima S., Mandel G., Fetcho J.R.
    J. Comp. Neurol. 480:1-18(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  4. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ7ZUS3_DANRE
AccessioniPrimary (citable) accession number: Q7ZUS3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 24, 2015
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.