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Protein
Submitted name:

Ribosomal protein L5a

Gene

rpl5a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • chordate embryonic development Source: ZFIN
  • ribosomal large subunit assembly Source: GO_Central
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-DRE-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DRE-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DRE-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DRE-72689 Formation of a pool of free 40S subunits
R-DRE-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DRE-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DRE-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal protein L5aImported
Gene namesi
Name:rpl5aImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 2

Organism-specific databases

ZFINiZDB-GENE-030131-5161 rpl5a

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSDARG00000020197

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000006085

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini192 – 283Ribosomal_L18_cInterPro annotationAdd BLAST92

Phylogenomic databases

eggNOGiKOG0875 Eukaryota
COG0256 LUCA
GeneTreeiENSGT00390000008456
HOGENOMiHOG000105947
HOVERGENiHBG009347
KOiK02932
OMAiMNTLMED
OrthoDBiEOG091G0GZO
TreeFamiTF300044

Family and domain databases

HAMAPiMF_01337_A Ribosomal_L18_A, 1 hit
InterProiView protein in InterPro
IPR005485 Rbsml_L5_euk/L18_arc
IPR025607 Rbsml_L5e/L18P_C
PANTHERiPTHR23410 PTHR23410, 1 hit
PfamiView protein in Pfam
PF14204 Ribosomal_L18_c, 1 hit
PF17144 Ribosomal_L5e, 1 hit
PRINTSiPR00058 RIBOSOMALL5

Sequencei

Sequence statusi: Complete.

Q7ZUI0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFVKVVKNK SYFRRYQVKF RRRREGKTDY FARKRLVIQD KNKYNTPKYR
60 70 80 90 100
MIIRFSNRDI VCQIAYAKIE GDAIVCAAYS HELPKYGIAC GLTNYAAAYC
110 120 130 140 150
TGLLCARRLL NKFGLDKVYE GQVEVTGDEF NVESIDGQPG AFSCYLDAGL
160 170 180 190 200
TRTTTGNKVF GALKGAVDGG LSIPHSTKRF PGYDSESKEF NAEVHRKHIL
210 220 230 240 250
GLNVSEYMSL LMEEDEELYK KQFSRFIKNG VTPESIEEMY KKAHASIREN
260 270 280 290
PVHERKPKRE VKKKRWNRAK LTLAQRKDRV AQKKASFLRA QEAAADD
Length:297
Mass (Da):34,084
Last modified:June 1, 2003 - v1
Checksum:iD85D436D4587724F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU855908 Genomic DNA No translation available.
BC049035 mRNA Translation: AAH49035.1
BC065687 mRNA Translation: AAH65687.1
RefSeqiNP_956050.1, NM_199756.2
UniGeneiDr.76005

Genome annotation databases

EnsembliENSDART00000005944; ENSDARP00000006085; ENSDARG00000020197
GeneIDi326961
KEGGidre:326961

Similar proteinsi

Entry informationi

Entry nameiQ7ZUI0_DANRE
AccessioniPrimary (citable) accession number: Q7ZUI0
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 28, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health