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Protein
Submitted name:

Small nuclear ribonucleoprotein 40 (U5)

Gene

snrnp40

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-DRE-72163 mRNA Splicing - Major Pathway
R-DRE-72165 mRNA Splicing - Minor Pathway

Names & Taxonomyi

Protein namesi
Submitted name:
Small nuclear ribonucleoprotein 40 (U5)Imported
Gene namesi
Name:snrnp40Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 19

Organism-specific databases

ZFINiZDB-GENE-040426-978 snrnp40

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Virion

Expressioni

Gene expression databases

BgeeiENSDARG00000023160

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000038728

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini52 – 347WD_REPEATS_REGIONInterPro annotationAdd BLAST296
Repeati52 – 85WDPROSITE-ProRule annotationAdd BLAST34
Repeati95 – 136WDPROSITE-ProRule annotationAdd BLAST42
Repeati137 – 179WDPROSITE-ProRule annotationAdd BLAST43
Repeati179 – 220WDPROSITE-ProRule annotationAdd BLAST42
Repeati221 – 255WDPROSITE-ProRule annotationAdd BLAST35
Repeati282 – 312WDPROSITE-ProRule annotationAdd BLAST31
Repeati313 – 347WDPROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
HOGENOMiHOG000091644
HOVERGENiHBG105197
KOiK12857
OMAiGDCENYG
OrthoDBiEOG091G0DR4
TreeFamiTF300039

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

Q7ZTY9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIEPKKRVAD MAVVPVGVKR PRTELVAAAQ SQQLSAMGPP RSSSLQAPIM
60 70 80 90 100
LLSGHEGEVY CCKFHPNGAT LASSGYDRLI LMWNVYGDCE NYATLKGHSG
110 120 130 140 150
AVMELHYNTD GSLLFSASTD KTVCVWDSET GERVKRLKGH TSFVNSCFPA
160 170 180 190 200
RRGPQLACTG SDDGTVKLWD IRKKASVHTF QNTYQVLSVT FNDTSDQIIS
210 220 230 240 250
GGIDNDIKVW DLRQNKLIYS MQGHGDSVTG LSLSADGSYL LSNSMDNSVR
260 270 280 290 300
VWDIRPFAPK ERCVKIFQGN VHNFEKNLLR CSWSADGSKI AAGSADRFVY
310 320 330 340
IWDTTTRRIV YKLPGHAGSV NEVAFHPEEP IVLSGSSDKR LYIGEIQ
Length:347
Mass (Da):38,274
Last modified:June 1, 2003 - v1
Checksum:i443B83D0A5738889
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU207343 Genomic DNA No translation available.
BC051783 mRNA Translation: AAH51783.1
RefSeqiNP_956616.1, NM_200322.1
UniGeneiDr.133508

Genome annotation databases

EnsembliENSDART00000038230; ENSDARP00000038728; ENSDARG00000023160
GeneIDi393292
KEGGidre:393292

Similar proteinsi

Entry informationi

Entry nameiQ7ZTY9_DANRE
AccessioniPrimary (citable) accession number: Q7ZTY9
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 28, 2018
This is version 117 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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