ID SRGP1_HUMAN Reviewed; 1085 AA. AC Q7Z6B7; Q9H8A3; Q9P2P2; DT 07-JUN-2004, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2003, sequence version 1. DT 24-JAN-2024, entry version 177. DE RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1; DE Short=srGAP1; DE AltName: Full=Rho GTPase-activating protein 13; GN Name=SRGAP1; Synonyms=ARHGAP13, KIAA1304; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Uterus; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 23-1085 (ISOFORM 2). RC TISSUE=Brain; RX PubMed=10718198; DOI=10.1093/dnares/7.1.65; RA Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O.; RT "Prediction of the coding sequences of unidentified human genes. XVI. The RT complete sequences of 150 new cDNA clones from brain which code for large RT proteins in vitro."; RL DNA Res. 7:65-73(2000). RN [3] RP FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH ROBO1; CDC42 AND RHOA. RX PubMed=11672528; DOI=10.1016/s0092-8674(01)00530-x; RA Wong K., Ren X.R., Huang Y.Z., Xie Y., Liu G., Saito H., Tang H., Wen L., RA Brady-Kalnay S.M., Mei L., Wu J.Y., Xiong W.C., Rao Y.; RT "Signal transduction in neuronal migration: roles of GTPase activating RT proteins and the small GTPase Cdc42 in the Slit-Robo pathway."; RL Cell 107:209-221(2001). RN [4] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=17081983; DOI=10.1016/j.cell.2006.09.026; RA Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.; RT "Global, in vivo, and site-specific phosphorylation dynamics in signaling RT networks."; RL Cell 127:635-648(2006). RN [5] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18220336; DOI=10.1021/pr0705441; RA Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III; RT "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient RT phosphoproteomic analysis."; RL J. Proteome Res. 7:1346-1351(2008). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-999; THR-1001 AND SER-1032, RP AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [7] RP INTERACTION WITH FASLG. RX PubMed=19807924; DOI=10.1186/1471-2172-10-53; RA Voss M., Lettau M., Janssen O.; RT "Identification of SH3 domain interaction partners of human FasL (CD178) by RT phage display screening."; RL BMC Immunol. 10:53-53(2009). RN [8] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=20068231; DOI=10.1126/scisignal.2000475; RA Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., RA Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.; RT "Quantitative phosphoproteomics reveals widespread full phosphorylation RT site occupancy during mitosis."; RL Sci. Signal. 3:RA3-RA3(2010). RN [9] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21269460; DOI=10.1186/1752-0509-5-17; RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., RA Bennett K.L., Superti-Furga G., Colinge J.; RT "Initial characterization of the human central proteome."; RL BMC Syst. Biol. 5:17-17(2011). RN [10] RP HETEROOLIGOMERIZATION, AND DOMAIN F-BAR. RX PubMed=22467852; DOI=10.1242/jcs.098962; RA Coutinho-Budd J., Ghukasyan V., Zylka M.J., Polleux F.; RT "The F-BAR domains from srGAP1, srGAP2, and srGAP3 differentially regulate RT membrane deformation."; RL J. Cell Sci. 125:3390-3401(2012). RN [11] RP INVOLVEMENT IN NMTC2, VARIANTS NMTC2 HIS-149; THR-275; CYS-617 AND ARG-875, RP AND CHARACTERIZATION OF VARIANTS NMTC2 HIS-149; THR-275; CYS-617 AND RP ARG-875. RX PubMed=23539728; DOI=10.1210/jc.2012-3823; RA He H., Bronisz A., Liyanarachchi S., Nagy R., Li W., Huang Y., Akagi K., RA Saji M., Kula D., Wojcicka A., Sebastian N., Wen B., Puch Z., Kalemba M., RA Stachlewska E., Czetwertynska M., Dlugosinska J., Dymecka K., Ploski R., RA Krawczyk M., Morrison P.J., Ringel M.D., Kloos R.T., Jazdzewski K., RA Symer D.E., Vieland V.J., Ostrowski M., Jarzab B., de la Chapelle A.; RT "SRGAP1 is a candidate gene for papillary thyroid carcinoma RT susceptibility."; RL J. Clin. Endocrinol. Metab. 98:E973-E980(2013). RN [12] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-416; SER-835; SER-917; RP SER-932 AND SER-1032, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE RP ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). CC -!- FUNCTION: GTPase-activating protein for RhoA and Cdc42 small GTPases. CC Together with CDC42 seems to be involved in the pathway mediating the CC repulsive signaling of Robo and Slit proteins in neuronal migration. CC SLIT2, probably through interaction with ROBO1, increases the CC interaction of SRGAP1 with ROBO1 and inactivates CDC42. CC {ECO:0000269|PubMed:11672528}. CC -!- SUBUNIT: Homodimer (Probable). Forms a heterooligomer with SRGAP2 and CC SRGAP3 through its F-BAR domain. Interacts with ROBO1, CDC42 and RHOA. CC Interacts with FASLG. {ECO:0000269|PubMed:11672528, CC ECO:0000269|PubMed:19807924, ECO:0000305}. CC -!- INTERACTION: CC Q7Z6B7; Q14155: ARHGEF7; NbExp=4; IntAct=EBI-2481729, EBI-717515; CC Q7Z6B7; P42858: HTT; NbExp=4; IntAct=EBI-2481729, EBI-466029; CC Q7Z6B7; P63104: YWHAZ; NbExp=2; IntAct=EBI-2481729, EBI-347088; CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q7Z6B7-1; Sequence=Displayed; CC Name=2; CC IsoId=Q7Z6B7-2; Sequence=VSP_010580; CC -!- TISSUE SPECIFICITY: Expressed in brain, lung, kidney, and testis. CC {ECO:0000269|PubMed:11672528}. CC -!- DOMAIN: The F-BAR domain mediates oligomerization, binds membranes, and CC constrains plasma membrane protrusions. {ECO:0000269|PubMed:22467852}. CC -!- DISEASE: Thyroid cancer, non-medullary, 2 (NMTC2) [MIM:188470]: A form CC of non-medullary thyroid cancer (NMTC), a cancer characterized by CC tumors originating from the thyroid follicular cells. NMTCs represent CC approximately 95% of all cases of thyroid cancer and are classified CC into papillary, follicular, Hurthle cell, and anaplastic neoplasms. CC {ECO:0000269|PubMed:23539728}. Note=Disease susceptibility is CC associated with variants affecting the gene represented in this entry. CC -!- SEQUENCE CAUTION: CC Sequence=BAA92542.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC Sequence=BAA92542.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; BC053903; AAH53903.1; -; mRNA. DR EMBL; AB037725; BAA92542.1; ALT_INIT; mRNA. DR CCDS; CCDS8967.1; -. [Q7Z6B7-1] DR CCDS; CCDS91718.1; -. [Q7Z6B7-2] DR PIR; G59436; G59436. DR RefSeq; NP_001333130.1; NM_001346201.1. [Q7Z6B7-2] DR RefSeq; NP_065813.1; NM_020762.3. [Q7Z6B7-1] DR AlphaFoldDB; Q7Z6B7; -. DR SMR; Q7Z6B7; -. DR BioGRID; 121583; 37. DR DIP; DIP-53826N; -. DR IntAct; Q7Z6B7; 24. DR MINT; Q7Z6B7; -. DR STRING; 9606.ENSP00000347198; -. DR GlyConnect; 2077; 1 N-Linked glycan (1 site). DR GlyCosmos; Q7Z6B7; 3 sites, 4 glycans. DR GlyGen; Q7Z6B7; 7 sites, 2 N-linked glycans (1 site), 2 O-linked glycans (6 sites). DR iPTMnet; Q7Z6B7; -. DR PhosphoSitePlus; Q7Z6B7; -. DR SwissPalm; Q7Z6B7; -. DR BioMuta; SRGAP1; -. DR DMDM; 48428624; -. DR EPD; Q7Z6B7; -. DR jPOST; Q7Z6B7; -. DR MassIVE; Q7Z6B7; -. DR MaxQB; Q7Z6B7; -. DR PaxDb; 9606-ENSP00000347198; -. DR PeptideAtlas; Q7Z6B7; -. DR ProteomicsDB; 69392; -. [Q7Z6B7-1] DR ProteomicsDB; 69393; -. [Q7Z6B7-2] DR Pumba; Q7Z6B7; -. DR ABCD; Q7Z6B7; 7 sequenced antibodies. DR Antibodypedia; 29129; 280 antibodies from 28 providers. DR DNASU; 57522; -. DR Ensembl; ENST00000355086.8; ENSP00000347198.3; ENSG00000196935.10. [Q7Z6B7-1] DR Ensembl; ENST00000631006.3; ENSP00000485752.2; ENSG00000196935.10. [Q7Z6B7-2] DR GeneID; 57522; -. DR KEGG; hsa:57522; -. DR MANE-Select; ENST00000355086.8; ENSP00000347198.3; NM_020762.4; NP_065813.1. DR UCSC; uc010ssp.2; human. [Q7Z6B7-1] DR AGR; HGNC:17382; -. DR CTD; 57522; -. DR DisGeNET; 57522; -. DR GeneCards; SRGAP1; -. DR HGNC; HGNC:17382; SRGAP1. DR HPA; ENSG00000196935; Low tissue specificity. DR MalaCards; SRGAP1; -. DR MIM; 188470; phenotype. DR MIM; 606523; gene. DR neXtProt; NX_Q7Z6B7; -. DR OpenTargets; ENSG00000196935; -. DR PharmGKB; PA134887956; -. DR VEuPathDB; HostDB:ENSG00000196935; -. DR eggNOG; KOG3565; Eukaryota. DR GeneTree; ENSGT00950000182824; -. DR HOGENOM; CLU_005715_0_0_1; -. DR InParanoid; Q7Z6B7; -. DR OMA; LIVESCV; -. DR OrthoDB; 2904755at2759; -. DR PhylomeDB; Q7Z6B7; -. DR TreeFam; TF315892; -. DR PathwayCommons; Q7Z6B7; -. DR Reactome; R-HSA-428543; Inactivation of CDC42 and RAC1. DR Reactome; R-HSA-8980692; RHOA GTPase cycle. DR Reactome; R-HSA-9013148; CDC42 GTPase cycle. DR Reactome; R-HSA-9013149; RAC1 GTPase cycle. DR SignaLink; Q7Z6B7; -. DR SIGNOR; Q7Z6B7; -. DR BioGRID-ORCS; 57522; 10 hits in 1140 CRISPR screens. DR ChiTaRS; SRGAP1; human. DR GeneWiki; SRGAP1; -. DR GenomeRNAi; 57522; -. DR Pharos; Q7Z6B7; Tbio. DR PRO; PR:Q7Z6B7; -. DR Proteomes; UP000005640; Chromosome 12. DR RNAct; Q7Z6B7; Protein. DR Bgee; ENSG00000196935; Expressed in buccal mucosa cell and 188 other cell types or tissues. DR ExpressionAtlas; Q7Z6B7; baseline and differential. DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central. DR GO; GO:0005829; C:cytosol; TAS:Reactome. DR GO; GO:0005096; F:GTPase activator activity; TAS:Reactome. DR GO; GO:0030336; P:negative regulation of cell migration; IBA:GO_Central. DR GO; GO:0007165; P:signal transduction; IEA:InterPro. DR CDD; cd07683; F-BAR_srGAP1; 1. DR CDD; cd04383; RhoGAP_srGAP; 1. DR CDD; cd11955; SH3_srGAP1-3; 1. DR Gene3D; 1.20.1270.60; Arfaptin homology (AH) domain/BAR domain; 1. DR Gene3D; 1.10.555.10; Rho GTPase activation protein; 1. DR Gene3D; 2.30.30.40; SH3 Domains; 1. DR InterPro; IPR027267; AH/BAR_dom_sf. DR InterPro; IPR031160; F_BAR. DR InterPro; IPR001060; FCH_dom. DR InterPro; IPR008936; Rho_GTPase_activation_prot. DR InterPro; IPR000198; RhoGAP_dom. DR InterPro; IPR036028; SH3-like_dom_sf. DR InterPro; IPR001452; SH3_domain. DR InterPro; IPR035648; srGAP1/2/3_SH3. DR InterPro; IPR037451; srGAP1_F-BAR. DR PANTHER; PTHR14166; SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN; 1. DR PANTHER; PTHR14166:SF15; SLIT-ROBO RHO GTPASE-ACTIVATING PROTEIN 1; 1. DR Pfam; PF00611; FCH; 1. DR Pfam; PF00620; RhoGAP; 1. DR Pfam; PF00018; SH3_1; 1. DR SMART; SM00055; FCH; 1. DR SMART; SM00324; RhoGAP; 1. DR SMART; SM00326; SH3; 1. DR SUPFAM; SSF103657; BAR/IMD domain-like; 1. DR SUPFAM; SSF48350; GTPase activation domain, GAP; 1. DR SUPFAM; SSF50044; SH3-domain; 1. DR PROSITE; PS51741; F_BAR; 1. DR PROSITE; PS50238; RHOGAP; 1. DR PROSITE; PS50002; SH3; 1. DR Genevisible; Q7Z6B7; HS. PE 1: Evidence at protein level; KW Alternative splicing; Coiled coil; Disease variant; GTPase activation; KW Phosphoprotein; Reference proteome; SH3 domain. FT CHAIN 1..1085 FT /note="SLIT-ROBO Rho GTPase-activating protein 1" FT /id="PRO_0000056765" FT DOMAIN 19..314 FT /note="F-BAR" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01077" FT DOMAIN 506..694 FT /note="Rho-GAP" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00172" FT DOMAIN 743..802 FT /note="SH3" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00192" FT REGION 475..496 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 808..954 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 997..1038 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1051..1085 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COILED 351..390 FT /evidence="ECO:0000255" FT COILED 956..985 FT /evidence="ECO:0000255" FT COMPBIAS 808..830 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 831..857 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 933..947 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1056..1078 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 416 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 835 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 917 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 932 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 999 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:18669648" FT MOD_RES 1001 FT /note="Phosphothreonine" FT /evidence="ECO:0007744|PubMed:18669648" FT MOD_RES 1032 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:18669648, FT ECO:0007744|PubMed:23186163" FT VAR_SEQ 479..513 FT /note="RPPNVPPKPQKHRKSRPRSQYNTKLFNGDLETFVK -> SRGRRNSHTRHQ FT (in isoform 2)" FT /evidence="ECO:0000303|PubMed:10718198" FT /id="VSP_010580" FT VARIANT 149 FT /note="Q -> H (in NMTC2; does not affect the interaction FT with ROBO1; decreased GTPase activator activity; in SLIT2 FT and ROBO1-mediated inhibition of CDC42; dbSNP:rs781626187)" FT /evidence="ECO:0000269|PubMed:23539728" FT /id="VAR_075879" FT VARIANT 275 FT /note="A -> T (in NMTC2; does not affect the interaction FT with ROBO1; slightly increased GTPase activator activity; FT in SLIT2 and ROBO1-mediated inhibition of CDC42; FT dbSNP:rs797044990)" FT /evidence="ECO:0000269|PubMed:23539728" FT /id="VAR_075880" FT VARIANT 512 FT /note="V -> I (in dbSNP:rs74691643)" FT /evidence="ECO:0000269|PubMed:23539728" FT /id="VAR_075881" FT VARIANT 617 FT /note="R -> C (in NMTC2; does not affect the interaction FT with ROBO1; decreased GTPase activator activity; in SLIT2 FT and ROBO1-mediated inhibition of CDC42; dbSNP:rs114817817)" FT /evidence="ECO:0000269|PubMed:23539728" FT /id="VAR_075882" FT VARIANT 875 FT /note="H -> R (in NMTC2; does not affect the interaction FT with ROBO1; slightly increased GTPase activator activity; FT in SLIT2 and ROBO1-mediated inhibition of CDC42; FT dbSNP:rs61754221)" FT /evidence="ECO:0000269|PubMed:23539728" FT /id="VAR_075883" SQ SEQUENCE 1085 AA; 124264 MW; D7ED1F651344F0D9 CRC64; MSTPSRFKKD KEIIAEYESQ VKEIRAQLVE QQKCLEQQTE MRVQLLQDLQ DFFRKKAEIE TEYSRNLEKL AERFMAKTRS TKDHQQYKKD QNLLSPVNCW YLLLNQVRRE SKDHATLSDI YLNNVIMRFM QISEDSTRMF KKSKEIAFQL HEDLMKVLNE LYTVMKTYHM YHAESISAES KLKEAEKQEE KQIGRSGDPV FHIRLEERHQ RRSSVKKIEK MKEKRQAKYS ENKLKSIKAR NEYLLTLEAT NASVFKYYIH DLSDLIDCCD LGYHASLNRA LRTYLSAEYN LETSRHEGLD IIENAVDNLE PRSDKQRFME MYPAAFCPPM KFEFQSHMGD EVCQVSAQQP VQAELMLRYQ QLQSRLATLK IENEEVKKTT EATLQTIQDM VTIEDYDVSE CFQHSRSTES VKSTVSETYL SKPSIAKRRA NQQETEQFYF MKLREYLEGS NLITKLQAKH DLLQRTLGEG HRAEYMTTRP PNVPPKPQKH RKSRPRSQYN TKLFNGDLET FVKDSGQVIP LIVESCIRFI NLYGLQHQGI FRVSGSQVEV NDIKNSFERG ENPLADDQSN HDINSVAGVL KLYFRGLENP LFPKERFNDL ISCIRIDNLY ERALHIRKLL LTLPRSVLIV MRYLFAFLNH LSQYSDENMM DPYNLAICFG PTLMPVPEIQ DQVSCQAHVN EIIKTIIIHH ETIFPDAKEL DGPVYEKCMA GDDYCDSPYS EHGTLEEVDQ DAGTEPHTSE DECEPIEAIA KFDYVGRSAR ELSFKKGASL LLYHRASEDW WEGRHNGIDG LVPHQYIVVQ DMDDTFSDTL SQKADSEASS GPVTEDKSSS KDMNSPTDRH PDGYLARQRK RGEPPPPVRR PGRTSDGHCP LHPPHALSNS SVDLGSPSLA SHPRGLLQNR GLNNDSPERR RRPGHGSLTN ISRHDSLKKI DSPPIRRSTS SGQYTGFNDH KPLDPETIAQ DIEETMNTAL NELRELERQS TAKHAPDVVL DTLEQVKNSP TPATSTESLS PLHNVALRSS EPQIRRSTSS SSDTMSTFKP MVAPRMGVQL KPPALRPKPA VLPKTNPTIG PAPPPQGPTD KSCTM //