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Q7Z3T8 (ZFY16_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 91. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Zinc finger FYVE domain-containing protein 16
Alternative name(s):
Endofin
Endosome-associated FYVE domain protein
Gene names
Name:ZFYVE16
Synonyms:KIAA0305
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length1539 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

May be involved in regulating membrane trafficking in the endosomal pathway. Overexpression induces endosome aggregation. Required to target TOM1 to endosomes. Ref.1 Ref.7

Subunit structure

Interacts with the C-terminus of TOM1. Does not interact with TOM1L1 or TOM1L2. Ref.7

Subcellular location

Cytoplasm. Early endosome membrane; Peripheral membrane protein. Note: Localized to early endosomes. Membrane-associated, probably via its association with phosphatidylinositol 3-phosphate (PI3P). Ref.1

Tissue specificity

Widely expressed. Highly expressed in kidney, placenta and lung. Expressed at intermediate level in heart, brain, skeletal muscle, spleen and liver. Weakly expressed in colon, thymus and peripheral blood lymphocytes. Ref.1

Domain

The FYVE-type zinc finger is necessary and sufficient for its localization into early endosomes and mediates the association with PI3P. Ref.1

Sequence similarities

Contains 1 FYVE-type zinc finger.

Sequence caution

The sequence BAA20764.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

TOM1O607845EBI-298055,EBI-74634

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q7Z3T8-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q7Z3T8-3)

The sequence of this isoform differs from the canonical sequence as follows:
     807-809: AQA → GEC
     810-1539: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 15391539Zinc finger FYVE domain-containing protein 16
PRO_0000098716

Regions

Zinc finger747 – 80559FYVE-type

Amino acid modifications

Modified residue2191Phosphotyrosine Ref.8 Ref.13
Modified residue2211Phosphotyrosine Ref.8
Modified residue4461Phosphoserine Ref.11
Modified residue8151Phosphoserine Ref.11
Modified residue8451Phosphoserine Ref.11
Modified residue9391Phosphoserine Ref.6 Ref.10 Ref.11 Ref.12 Ref.14
Modified residue9461Phosphoserine Ref.6 Ref.11
Modified residue12091Phosphothreonine Ref.9
Modified residue12101Phosphoserine Ref.9

Natural variations

Alternative sequence807 – 8093AQA → GEC in isoform 2.
VSP_011019
Alternative sequence810 – 1539730Missing in isoform 2.
VSP_011020
Natural variant351A → E.
Corresponds to variant rs6893297 [ dbSNP | Ensembl ].
VAR_057492
Natural variant1921I → T. Ref.1 Ref.2 Ref.3 Ref.5
Corresponds to variant rs2544600 [ dbSNP | Ensembl ].
VAR_019489
Natural variant5981I → T. Ref.1 Ref.2 Ref.3 Ref.5
Corresponds to variant rs259028 [ dbSNP | Ensembl ].
VAR_019490
Natural variant10551S → G. Ref.1 Ref.2 Ref.3
Corresponds to variant rs249038 [ dbSNP | Ensembl ].
VAR_019491
Natural variant15191T → N.
Corresponds to variant rs16877836 [ dbSNP | Ensembl ].
VAR_057493

Experimental info

Mutagenesis7531C → S: Abolishes localization to endosomes and association with PI3P. Ref.1
Sequence conflict821E → K in AAH30808. Ref.5
Sequence conflict1511P → L in CAI45932. Ref.3
Sequence conflict3851C → S in CAD97666. Ref.3
Sequence conflict4871T → A in CAD89968. Ref.3
Sequence conflict6161T → I in CAD89968. Ref.3
Sequence conflict9341N → D in CAD89968. Ref.3
Sequence conflict12171L → F in CAI45932. Ref.3
Sequence conflict13081A → T in CAD97666. Ref.3

Secondary structure

.................... 1539
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified May 18, 2010. Version 3.
Checksum: D9C2F8DDE12D69E2

FASTA1,539168,903
        10         20         30         40         50         60 
MDSYFKAAVS DLDKLLDDFE QNPDEQDYLQ DVQNAYDSNH CSVSSELASS QRTSLLPKDQ 

        70         80         90        100        110        120 
ECVNSCASSE TSYGTNESSL NEKTLKGLTS IQNEKNVTGL DLLSSVDGGT SDEIQPLYMG 

       130        140        150        160        170        180 
RCSKPICDLI SDMGNLVHAT NSEEDIKKLL PDDFKSNADS LIGLDLSSVS DTPCVSSTDH 

       190        200        210        220        230        240 
DSDTVREQQN DISSELQNRE IGGIKELGIK VDTTLSDSYN YSGTENLKDK KIFNQLESIV 

       250        260        270        280        290        300 
DFNMSSALTR QSSKMFHAKD KLQHKSQPCG LLKDVGLVKE EVDVAVITAA ECLKEEGKTS 

       310        320        330        340        350        360 
ALTCSLPKNE DLCLNDSNSR DENFKLPDFS FQEDKTVIKQ SAQEDSKSLD LKDNDVIQDS 

       370        380        390        400        410        420 
SSALHVSSKD VPSSLSCLPA SGSMCGSLIE SKARGDFLPQ HEHKDNIQDA VTIHEEIQNS 

       430        440        450        460        470        480 
VVLGGEPFKE NDLLKQEKCK SILLQSLIEG MEDRKIDPDQ TVIRAESLDG GDTSSTVVES 

       490        500        510        520        530        540 
QEGLSGTHVP ESSDCCEGFI NTFSSNDMDG QDLDYFNIDE GAKSGPLISD AELDAFLTEQ 

       550        560        570        580        590        600 
YLQTTNIKSF EENVNDSKSQ MNQIDMKGLD DGNINNIYFN AEAGAIGESH GINIICEIVD 

       610        620        630        640        650        660 
KQNTIENGLS LGEKSTIPVQ QGLPTSKSEI TNQLSVSDIN SQSVGGARPK QLFSLPSRTR 

       670        680        690        700        710        720 
SSKDLNKPDV PDTIESEPST ADTVVPITCA IDSTADPQVS FNSNYIDIES NSEGGSSFVT 

       730        740        750        760        770        780 
ANEDSVPENT CKEGLVLGQK QPTWVPDSEA PNCMNCQVKF TFTKRRHHCR ACGKVFCGVC 

       790        800        810        820        830        840 
CNRKCKLQYL EKEARVCVVC YETISKAQAF ERMMSPTGSN LKSNHSDECT TVQPPQENQT 

       850        860        870        880        890        900 
SSIPSPATLP VSALKQPGVE GLCSKEQKRV WFADGILPNG EVADTTKLSS GSKRCSEDFS 

       910        920        930        940        950        960 
PLSPDVPMTV NTVDHSHSTT VEKPNNETGD ITRNEIIQSP ISQVPSVEKL SMNTGNEGLP 

       970        980        990       1000       1010       1020 
TSGSFTLDDD VFAETEEPSS PTGVLVNSNL PIASISDYRL LCDINKYVCN KISLLPNDED 

      1030       1040       1050       1060       1070       1080 
SLPPLLVASG EKGSVPVVEE HPSHEQIILL LEGESFHPVT FVLNANLLVN VKFIFYSSDK 

      1090       1100       1110       1120       1130       1140 
YWYFSTNGLH GLGQAEIIIL LLCLPNEDTI PKDIFRLFIT IYKDALKGKY IENLDNITFT 

      1150       1160       1170       1180       1190       1200 
ESFLSSKDHG GFLFITPTFQ KLDDLSLPSN PFLCGILIQK LEIPWAKVFP MRLMLRLGAE 

      1210       1220       1230       1240       1250       1260 
YKAYPAPLTS IRGRKPLFGE IGHTIMNLLV DLRNYQYTLH NIDQLLIHME MGKSCIKIPR 

      1270       1280       1290       1300       1310       1320 
KKYSDVMKVL NSSNEHVISI GASFSTEADS HLVCIQNDGI YETQANSATG HPRKVTGASF 

      1330       1340       1350       1360       1370       1380 
VVFNGALKTS SGFLAKSSIV EDGLMVQITP ETMNGLRLAL REQKDFKITC GKVDAVDLRE 

      1390       1400       1410       1420       1430       1440 
YVDICWVDAE EKGNKGVISS VDGISLQGFP SEKIKLEADF ETDEKIVKCT EVFYFLKDQD 

      1450       1460       1470       1480       1490       1500 
LSILSTSYQF AKEIAMACSA ALCPHLKTLK SNGMNKIGLR VSIDTDMVEF QAGSEGQLLP 

      1510       1520       1530 
QHYLNDLDSA LIPVIHGGTS NSSLPLEIEL VFFIIEHLF 

« Hide

Isoform 2 [UniParc].

Checksum: CD3523B4CB36000A
Show »

FASTA80988,377

References

« Hide 'large scale' references
[1]"Endofin, an endosomal FYVE domain protein."
Seet L.-F., Hong W.
J. Biol. Chem. 276:42445-42454(2001) [PubMed: 11546807] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DOMAIN, MUTAGENESIS OF CYS-753, VARIANTS THR-192; THR-598 AND GLY-1055.
[2]"Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro."
Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
DNA Res. 4:141-150(1997) [PubMed: 9205841] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS THR-192; THR-598 AND GLY-1055.
Tissue: Brain.
[3]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS THR-192; THR-598 AND GLY-1055.
Tissue: Cervix, Spinal cord and Uterine endothelium.
[4]"The DNA sequence and comparative analysis of human chromosome 5."
Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S. expand/collapse author list , Branscomb E., Caoile C., Challacombe J.F., Chan Y.M., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Lopez F., Lou Y., Martinez D., Medina C., Morgan J., Nandkeshwar R., Noonan J.P., Pitluck S., Pollard M., Predki P., Priest J., Ramirez L., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wheeler J., Wu K., Yang J., Dickson M., Cheng J.-F., Eichler E.E., Olsen A., Pennacchio L.A., Rokhsar D.S., Richardson P., Lucas S.M., Myers R.M., Rubin E.M.
Nature 431:268-274(2004) [PubMed: 15372022] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANTS THR-192 AND THR-598.
Tissue: Lung.
[6]"Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry."
Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M., Peters E.C.
Anal. Chem. 76:2763-2772(2004) [PubMed: 15144186] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939 AND SER-946, MASS SPECTROMETRY.
Tissue: Leukemic T-cell.
[7]"Endofin recruits TOM1 to endosomes."
Seet L.-F., Liu N., Hanson B.J., Hong W.
J. Biol. Chem. 279:4670-4679(2004) [PubMed: 14613930] [Abstract]
Cited for: FUNCTION, INTERACTION WITH TOM1.
[8]"Immunoaffinity profiling of tyrosine phosphorylation in cancer cells."
Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J.
Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-219 AND TYR-221, MASS SPECTROMETRY.
[9]"Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis."
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III
J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1209 AND SER-1210, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[10]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[11]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-446; SER-815; SER-845; SER-939 AND SER-946, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[12]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939, MASS SPECTROMETRY.
Tissue: Embryonic kidney.
[13]"An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells."
Heibeck T.H., Ding S.-J., Opresko L.K., Zhao R., Schepmoes A.A., Yang F., Tolmachev A.V., Monroe M.E., Camp D.G. II, Smith R.D., Wiley H.S., Qian W.-J.
J. Proteome Res. 8:3852-3861(2009) [PubMed: 19534553] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-219, MASS SPECTROMETRY.
Tissue: Mammary epithelium.
[14]"Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939, MASS SPECTROMETRY.
Tissue: Leukemic T-cell.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF434817 mRNA. Translation: AAL30772.1.
AB002303 mRNA. Translation: BAA20764.2. Different initiation.
AL833087 mRNA. Translation: CAD89968.1.
BX537424 mRNA. Translation: CAD97666.1.
CR933621 mRNA. Translation: CAI45932.1.
AC008771 Genomic DNA. No translation available.
BC030808 mRNA. Translation: AAH30808.1.
IPIIPI00424460.
IPI00424466.
RefSeqNP_001098721.1. NM_001105251.1.
NP_055548.3. NM_014733.3.
UniGeneHs.482660.
Hs.660410.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3T7LX-ray1.09A733-820[»]
ProteinModelPortalQ7Z3T8.
SMRQ7Z3T8. Positions 735-808, 817-853.
ModBaseSearch...

Protein-protein interaction databases

IntActQ7Z3T8. 3 interactions.
MINTMINT-1196290.
STRINGQ7Z3T8.

PTM databases

PhosphoSiteQ7Z3T8.

Polymorphism databases

DMDM296453075.

Proteomic databases

PRIDEQ7Z3T8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000338008; ENSP00000337159; ENSG00000039319.
ENST00000425484; ENSP00000400229; ENSG00000039319.
GeneID9765.
KEGGhsa:9765.
UCSCuc003kgp.2. human.
uc003kgq.2. human.
uc010jak.1. human.

Organism-specific databases

CTD9765.
GeneCardsGC05P079739.
H-InvDBHIX0004994.
HGNCHGNC:20756. ZFYVE16.
HPAHPA035935.
HPA035936.
MIM608880. gene.
neXtProtNX_Q7Z3T8.
PharmGKBPA134873366.
HUGESearch...
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG07857.
GeneTreeENSGT00530000063454.
HOGENOMHBG125297.
HOVERGENHBG098617.
InParanoidQ7Z3T8.
OMAYTLHNID.
OrthoDBEOG4ZKJKD.
PhylomeDBQ7Z3T8.

Enzyme and pathway databases

Pathway_Interaction_DBbmppathway. BMP receptor signaling.
tgfbrpathway. TGF-beta receptor signaling.
ReactomeREACT_111102. Signal Transduction.

Gene expression databases

ArrayExpressQ7Z3T8.
BgeeQ7Z3T8.
CleanExHS_ZFYVE16.
GenevestigatorQ7Z3T8.
GermOnlineENSG00000039319. Homo sapiens.

Family and domain databases

InterProIPR022557. DUF3480.
IPR000306. Znf_FYVE.
IPR017455. Znf_FYVE-rel.
IPR011011. Znf_FYVE_PHD.
IPR017165. Znf_FYVE_SARA/endofin.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
Gene3DG3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit.
KOK04679.
PfamPF11979. DUF3480. 1 hit.
PF01363. FYVE. 1 hit.
[Graphical view]
PIRSFPIRSF037289. SARA/endofin. 1 hit.
SMARTSM00064. FYVE. 1 hit.
[Graphical view]
SUPFAMSSF57903. FYVE_PHD_ZnF. 1 hit.
PROSITEPS50178. ZF_FYVE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio36752.
SOURCESearch...

Entry information

Entry nameZFY16_HUMAN
AccessionPrimary (citable) accession number: Q7Z3T8
Secondary accession number(s): O15023 expand/collapse secondary AC list , Q5H9U2, Q7LAU7, Q86T69, Q8N5L3, Q8NEK3
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: May 18, 2010
Last modified: January 25, 2012
This is version 91 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 5

Human chromosome 5: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families