Q7Z3T8 (ZFY16_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 91.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger FYVE domain-containing protein 16 Alternative name(s): Endofin Endosome-associated FYVE domain protein | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1539 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May be involved in regulating membrane trafficking in the endosomal pathway. Overexpression induces endosome aggregation. Required to target TOM1 to endosomes. Ref.1 Ref.7 |
| Subunit structure | Interacts with the C-terminus of TOM1. Does not interact with TOM1L1 or TOM1L2. Ref.7 |
| Subcellular location | Cytoplasm. Early endosome membrane; Peripheral membrane protein. Note: Localized to early endosomes. Membrane-associated, probably via its association with phosphatidylinositol 3-phosphate (PI3P). Ref.1 |
| Tissue specificity | Widely expressed. Highly expressed in kidney, placenta and lung. Expressed at intermediate level in heart, brain, skeletal muscle, spleen and liver. Weakly expressed in colon, thymus and peripheral blood lymphocytes. Ref.1 |
| Domain | The FYVE-type zinc finger is necessary and sufficient for its localization into early endosomes and mediates the association with PI3P. Ref.1 |
| Sequence similarities | Contains 1 FYVE-type zinc finger. |
| Sequence caution | The sequence BAA20764.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| TOM1 | O60784 | 5 | EBI-298055,EBI-74634 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q7Z3T8-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q7Z3T8-3) The sequence of this isoform differs from the canonical sequence as follows: 807-809: AQA → GEC 810-1539: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1539 | 1539 | Zinc finger FYVE domain-containing protein 16 | PRO_0000098716 | ||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||
| Zinc finger | 747 – 805 | 59 | FYVE-type | |||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||
| Modified residue | 219 | 1 | Phosphotyrosine Ref.8 Ref.13 | |||||||||||||||||||||||||
| Modified residue | 221 | 1 | Phosphotyrosine Ref.8 | |||||||||||||||||||||||||
| Modified residue | 446 | 1 | Phosphoserine Ref.11 | |||||||||||||||||||||||||
| Modified residue | 815 | 1 | Phosphoserine Ref.11 | |||||||||||||||||||||||||
| Modified residue | 845 | 1 | Phosphoserine Ref.11 | |||||||||||||||||||||||||
| Modified residue | 939 | 1 | Phosphoserine Ref.6 Ref.10 Ref.11 Ref.12 Ref.14 | |||||||||||||||||||||||||
| Modified residue | 946 | 1 | Phosphoserine Ref.6 Ref.11 | |||||||||||||||||||||||||
| Modified residue | 1209 | 1 | Phosphothreonine Ref.9 | |||||||||||||||||||||||||
| Modified residue | 1210 | 1 | Phosphoserine Ref.9 | |||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||
| Alternative sequence | 807 – 809 | 3 | AQA → GEC in isoform 2. | VSP_011019 | ||||||||||||||||||||||||
| Alternative sequence | 810 – 1539 | 730 | Missing in isoform 2. | VSP_011020 | ||||||||||||||||||||||||
| Natural variant | 35 | 1 | A → E. Corresponds to variant rs6893297 [ dbSNP | Ensembl ]. | VAR_057492 | ||||||||||||||||||||||||
| Natural variant | 192 | 1 | I → T. Ref.1 Ref.2 Ref.3 Ref.5 Corresponds to variant rs2544600 [ dbSNP | Ensembl ]. | VAR_019489 | ||||||||||||||||||||||||
| Natural variant | 598 | 1 | I → T. Ref.1 Ref.2 Ref.3 Ref.5 Corresponds to variant rs259028 [ dbSNP | Ensembl ]. | VAR_019490 | ||||||||||||||||||||||||
| Natural variant | 1055 | 1 | S → G. Ref.1 Ref.2 Ref.3 Corresponds to variant rs249038 [ dbSNP | Ensembl ]. | VAR_019491 | ||||||||||||||||||||||||
| Natural variant | 1519 | 1 | T → N. Corresponds to variant rs16877836 [ dbSNP | Ensembl ]. | VAR_057493 | ||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||
| Mutagenesis | 753 | 1 | C → S: Abolishes localization to endosomes and association with PI3P. Ref.1 | |||||||||||||||||||||||||
| Sequence conflict | 82 | 1 | E → K in AAH30808. Ref.5 | |||||||||||||||||||||||||
| Sequence conflict | 151 | 1 | P → L in CAI45932. Ref.3 | |||||||||||||||||||||||||
| Sequence conflict | 385 | 1 | C → S in CAD97666. Ref.3 | |||||||||||||||||||||||||
| Sequence conflict | 487 | 1 | T → A in CAD89968. Ref.3 | |||||||||||||||||||||||||
| Sequence conflict | 616 | 1 | T → I in CAD89968. Ref.3 | |||||||||||||||||||||||||
| Sequence conflict | 934 | 1 | N → D in CAD89968. Ref.3 | |||||||||||||||||||||||||
| Sequence conflict | 1217 | 1 | L → F in CAI45932. Ref.3 | |||||||||||||||||||||||||
| Sequence conflict | 1308 | 1 | A → T in CAD97666. Ref.3 | |||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||
| Turn | 737 – 739 | 3 | ||||||||||||||||||||||||||
| Helix | 747 – 749 | 3 | ||||||||||||||||||||||||||
| Turn | 754 – 756 | 3 | ||||||||||||||||||||||||||
| Beta strand | 762 – 764 | 3 | ||||||||||||||||||||||||||
| Turn | 770 – 772 | 3 | ||||||||||||||||||||||||||
| Helix | 778 – 780 | 3 | ||||||||||||||||||||||||||
| Beta strand | 783 – 786 | 4 | ||||||||||||||||||||||||||
| Turn | 788 – 790 | 3 | ||||||||||||||||||||||||||
| Beta strand | 791 – 796 | 6 | ||||||||||||||||||||||||||
| Helix | 798 – 807 | 10 | ||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Endofin, an endosomal FYVE domain protein." Seet L.-F., Hong W. J. Biol. Chem. 276:42445-42454(2001) [PubMed: 11546807] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DOMAIN, MUTAGENESIS OF CYS-753, VARIANTS THR-192; THR-598 AND GLY-1055. |
| [2] | "Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro." Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 4:141-150(1997) [PubMed: 9205841] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS THR-192; THR-598 AND GLY-1055. Tissue: Brain. |
| [3] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS THR-192; THR-598 AND GLY-1055. Tissue: Cervix, Spinal cord and Uterine endothelium. |
| [4] | "The DNA sequence and comparative analysis of human chromosome 5." Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S. Rubin E.M.Nature 431:268-274(2004) [PubMed: 15372022] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANTS THR-192 AND THR-598. Tissue: Lung. |
| [6] | "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry." Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M., Peters E.C. Anal. Chem. 76:2763-2772(2004) [PubMed: 15144186] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939 AND SER-946, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [7] | "Endofin recruits TOM1 to endosomes." Seet L.-F., Liu N., Hanson B.J., Hong W. J. Biol. Chem. 279:4670-4679(2004) [PubMed: 14613930] [Abstract] Cited for: FUNCTION, INTERACTION WITH TOM1. |
| [8] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-219 AND TYR-221, MASS SPECTROMETRY. |
| [9] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1209 AND SER-1210, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-446; SER-815; SER-845; SER-939 AND SER-946, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [13] | "An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells." Heibeck T.H., Ding S.-J., Opresko L.K., Zhao R., Schepmoes A.A., Yang F., Tolmachev A.V., Monroe M.E., Camp D.G. II, Smith R.D., Wiley H.S., Qian W.-J. J. Proteome Res. 8:3852-3861(2009) [PubMed: 19534553] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-219, MASS SPECTROMETRY. Tissue: Mammary epithelium. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-939, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF434817 mRNA. Translation: AAL30772.1. AB002303 mRNA. Translation: BAA20764.2. Different initiation. AL833087 mRNA. Translation: CAD89968.1. BX537424 mRNA. Translation: CAD97666.1. CR933621 mRNA. Translation: CAI45932.1. AC008771 Genomic DNA. No translation available. BC030808 mRNA. Translation: AAH30808.1. | ||||||||||||
| IPI | IPI00424460. IPI00424466. | ||||||||||||
| RefSeq | NP_001098721.1. NM_001105251.1. NP_055548.3. NM_014733.3. | ||||||||||||
| UniGene | Hs.482660. Hs.660410. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q7Z3T8. | ||||||||||||
| SMR | Q7Z3T8. Positions 735-808, 817-853. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q7Z3T8. 3 interactions. | ||||||||||||
| MINT | MINT-1196290. | ||||||||||||
| STRING | Q7Z3T8. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q7Z3T8. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 296453075. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | Q7Z3T8. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000338008; ENSP00000337159; ENSG00000039319. ENST00000425484; ENSP00000400229; ENSG00000039319. | ||||||||||||
| GeneID | 9765. | ||||||||||||
| KEGG | hsa:9765. | ||||||||||||
| UCSC | uc003kgp.2. human. uc003kgq.2. human. uc010jak.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 9765. | ||||||||||||
| GeneCards | GC05P079739. | ||||||||||||
| H-InvDB | HIX0004994. | ||||||||||||
| HGNC | HGNC:20756. ZFYVE16. | ||||||||||||
| HPA | HPA035935. HPA035936. | ||||||||||||
| MIM | 608880. gene. | ||||||||||||
| neXtProt | NX_Q7Z3T8. | ||||||||||||
| PharmGKB | PA134873366. | ||||||||||||
| HUGE | Search... | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG07857. | ||||||||||||
| GeneTree | ENSGT00530000063454. | ||||||||||||
| HOGENOM | HBG125297. | ||||||||||||
| HOVERGEN | HBG098617. | ||||||||||||
| InParanoid | Q7Z3T8. | ||||||||||||
| OMA | YTLHNID. | ||||||||||||
| OrthoDB | EOG4ZKJKD. | ||||||||||||
| PhylomeDB | Q7Z3T8. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Pathway_Interaction_DB | bmppathway. BMP receptor signaling. tgfbrpathway. TGF-beta receptor signaling. | ||||||||||||
| Reactome | REACT_111102. Signal Transduction. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q7Z3T8. | ||||||||||||
| Bgee | Q7Z3T8. | ||||||||||||
| CleanEx | HS_ZFYVE16. | ||||||||||||
| Genevestigator | Q7Z3T8. | ||||||||||||
| GermOnline | ENSG00000039319. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR022557. DUF3480. IPR000306. Znf_FYVE. IPR017455. Znf_FYVE-rel. IPR011011. Znf_FYVE_PHD. IPR017165. Znf_FYVE_SARA/endofin. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit. | ||||||||||||
| KO | K04679. | ||||||||||||
| Pfam | PF11979. DUF3480. 1 hit. PF01363. FYVE. 1 hit. [Graphical view] | ||||||||||||
| PIRSF | PIRSF037289. SARA/endofin. 1 hit. | ||||||||||||
| SMART | SM00064. FYVE. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF57903. FYVE_PHD_ZnF. 1 hit. | ||||||||||||
| PROSITE | PS50178. ZF_FYVE. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| NextBio | 36752. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | ZFY16_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q7Z3T8 Secondary accession number(s): O15023 Q8NEK3 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with