Q7Z392 (TPC11_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 69.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Trafficking protein particle complex subunit 11 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1133 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage. Ref.8 |
| Subunit structure | Component of the multisubunit TRAPP (transport protein particle) complex, which includes at least TRAPPC2, TRAPPC2L, TRAPPC3, TRAPPC3L, TRAPPC4, TRAPPC5, TRAPPC8, TRAPPC9, TRAPPC10, TRAPPC11 and TRAPPC12. Ref.8 |
| Subcellular location | Golgi apparatus › cis-Golgi network By similarity. |
| Sequence similarities | Belongs to the TRAPPC11 family. |
| Sequence caution | The sequence BAB14240.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAB14556.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAB15617.1 differs from that shown. Reason: Erroneous termination at position 1063. Translated as Gln. The sequence BAG37533.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence CAB66686.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence CAD91169.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence CAD97983.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
| Keywords | |
|---|---|
| Biological process | ER-Golgi transport Transport |
| Cellular component | Golgi apparatus |
| Coding sequence diversity | Alternative splicing |
| PTM | Acetylation |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | vesicle-mediated transport Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | Golgi apparatus Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q7Z392-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q7Z392-2) The sequence of this isoform differs from the canonical sequence as follows: 1-656: Missing. 1067-1086: RILPGTEQEMLYNFYPLMAG → PAQAFYTYQYFCQATGSTHG 1087-1133: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q7Z392-3) The sequence of this isoform differs from the canonical sequence as follows: 1067-1086: RILPGTEQEMLYNFYPLMAG → PAQAFYTYQYFCQATGSTHG 1087-1133: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q7Z392-4) The sequence of this isoform differs from the canonical sequence as follows: 962-1018: CFCLQCPSLG...VENIPLHVNA → LYYLLEKDLS...VVTCQVSPTE 1019-1133: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1133 | 1133 | Trafficking protein particle complex subunit 11 | PRO_0000348072 | |||||
Amino acid modifications | |||||||||
| Modified residue | 245 | 1 | N6-acetyllysine Ref.6 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 656 | 656 | Missing in isoform 2. | VSP_035095 | |||||
| Alternative sequence | 962 – 1018 | 57 | CFCLQ…LHVNA → LYYLLEKDLSNGEYPHHHNC HHSAARDCGEYPSPCECRSA VIWACQRVVTCQVSPTE in isoform 4. | VSP_035096 | |||||
| Alternative sequence | 1019 – 1133 | 115 | Missing in isoform 4. | VSP_035097 | |||||
| Alternative sequence | 1067 – 1086 | 20 | RILPG…PLMAG → PAQAFYTYQYFCQATGSTHG in isoform 2 and isoform 3. | VSP_035098 | |||||
| Alternative sequence | 1087 – 1133 | 47 | Missing in isoform 2 and isoform 3. | VSP_035099 | |||||
Experimental info | |||||||||
| Sequence conflict | 70 | 1 | T → A in AAH51724. Ref.2 | ||||||
| Sequence conflict | 197 | 1 | Q → L in AAH51724. Ref.2 | ||||||
| Sequence conflict | 312 | 1 | S → F in AAH51724. Ref.2 | ||||||
| Sequence conflict | 397 | 1 | W → R in BAG37533. Ref.3 | ||||||
| Sequence conflict | 467 | 1 | K → E in AAH51724. Ref.2 | ||||||
| Sequence conflict | 544 | 1 | N → K in BAB15617. Ref.3 | ||||||
| Sequence conflict | 660 | 1 | V → L in AAH51724. Ref.2 | ||||||
| Sequence conflict | 661 | 1 | P → L in BAB15617. Ref.3 | ||||||
| Sequence conflict | 697 | 1 | R → K in CAG38584. Ref.4 | ||||||
| Sequence conflict | 723 – 744 | 22 | Missing in BAB14556. Ref.3 | ||||||
| Sequence conflict | 812 | 1 | T → P in CAD91169. Ref.1 | ||||||
| Sequence conflict | 812 | 1 | T → P in CAG38584. Ref.4 | ||||||
| Sequence conflict | 812 | 1 | T → P in CAB66686. Ref.5 | ||||||
| Sequence conflict | 842 | 1 | Y → C in BAB15617. Ref.3 | ||||||
| Sequence conflict | 865 | 1 | V → I in BAB14240. Ref.3 | ||||||
| Sequence conflict | 869 | 1 | E → G in BAB14556. Ref.3 | ||||||
| Sequence conflict | 1011 | 1 | N → S in BAB14240. Ref.3 | ||||||
| Sequence conflict | 1030 | 1 | L → S in BAB14556. Ref.3 | ||||||
| Sequence conflict | 1112 | 1 | I → L in CAD97983. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 4). Tissue: Colon epithelium and Endometrium. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). Tissue: Testis. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 199-1133 (ISOFORM 1). Tissue: Ovary and Trachea. |
| [4] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 319-1133 (ISOFORM 1). |
| [5] | "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs." Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. Poustka A.Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 298-1133 (ISOFORM 1). Tissue: Testis. |
| [6] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-245, MASS SPECTROMETRY. |
| [7] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [8] | "C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking." Scrivens P.J., Noueihed B., Shahrzad N., Hul S., Brunet S., Sacher M. Mol. Biol. Cell 22:2083-2093(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, IDENTIFICATION IN TRAPP COMPLEX. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AL833571 mRNA. Translation: CAD91169.1. Different initiation. BX538044 mRNA. Translation: CAD97983.1. Different initiation. BC051724 mRNA. Translation: AAH51724.1. BC139745 mRNA. Translation: AAI39746.1. AK022778 mRNA. Translation: BAB14240.1. Different initiation. AK023390 mRNA. Translation: BAB14556.1. Different initiation. AK026992 mRNA. Translation: BAB15617.1. Sequence problems. AK315057 mRNA. Translation: BAG37533.1. Different initiation. CR533553 mRNA. Translation: CAG38584.1. AL136752 mRNA. Translation: CAB66686.1. Different initiation. |
| IPI | IPI00375684. IPI00396048. IPI00412941. IPI00964845. |
| RefSeq | NP_068761.4. NM_021942.5. NP_951008.1. NM_199053.2. |
| UniGene | Hs.443240. |
3D structure databases | |
| ProteinModelPortal | Q7Z392. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-48282N. |
| IntAct | Q7Z392. 2 interactions. |
PTM databases | |
| PhosphoSite | Q7Z392. |
Polymorphism databases | |
| DMDM | 205696378. |
Proteomic databases | |
| PaxDb | Q7Z392. |
| PRIDE | Q7Z392. |
Protocols and materials databases | |
| DNASU | 60684. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000334690; ENSP00000335371; ENSG00000168538. ENST00000357207; ENSP00000349738; ENSG00000168538. |
| GeneID | 60684. |
| KEGG | hsa:60684. |
| UCSC | uc003ivw.3. human. uc003ivx.3. human. uc010isc.3. human. |
Organism-specific databases | |
| CTD | 60684. |
| GeneCards | GC04P184581. |
| H-InvDB | HIX0004658. |
| HGNC | HGNC:25751. TRAPPC11. |
| HPA | HPA045427. |
| MIM | 614138. gene. |
| neXtProt | NX_Q7Z392. |
| PharmGKB | PA162379849. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG81047. |
| HOVERGEN | HBG107625. |
| InParanoid | Q7Z392. |
| OMA | RSWRQGI. |
| OrthoDB | EOG4B8JC8. |
Gene expression databases | |
| ArrayExpress | Q7Z392. |
| Bgee | Q7Z392. |
| CleanEx | HS_C4orf41. |
| Genevestigator | Q7Z392. |
Family and domain databases | |
| InterPro | IPR012880. DUF1683_C. IPR021773. Foie-gras_1. [Graphical view] |
| Pfam | PF11817. Foie-gras_1. 1 hit. PF07919. Gryzun. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 60684. |
| NextBio | 65514. |
| SOURCE | Search... |
Entry information
| Entry name | TPC11_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q7Z392 Secondary accession number(s): A4QPB8 Q9H9I7 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Uncharacterized protein families (UPF) List of uncharacterized protein family (UPF) entries |
| Human chromosome 4 Human chromosome 4: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
