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Q7Z392 (TPC11_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Trafficking protein particle complex subunit 11
Gene names
Name:TRAPPC11
Synonyms:C4orf41
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length1133 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage. Ref.8

Subunit structure

Component of the multisubunit TRAPP (transport protein particle) complex, which includes at least TRAPPC2, TRAPPC2L, TRAPPC3, TRAPPC3L, TRAPPC4, TRAPPC5, TRAPPC8, TRAPPC9, TRAPPC10, TRAPPC11 and TRAPPC12. Ref.8

Subcellular location

Golgi apparatuscis-Golgi network By similarity.

Sequence similarities

Belongs to the TRAPPC11 family.

Sequence caution

The sequence BAB14240.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence BAB14556.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence BAB15617.1 differs from that shown. Reason: Erroneous termination at position 1063. Translated as Gln.

The sequence BAG37533.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence CAB66686.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence CAD91169.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

The sequence CAD97983.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Ontologies

Keywords
   Biological processER-Golgi transport
Transport
   Cellular componentGolgi apparatus
   Coding sequence diversityAlternative splicing
   PTMAcetylation
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processvesicle-mediated transport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentGolgi apparatus

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q7Z392-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q7Z392-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-656: Missing.
     1067-1086: RILPGTEQEMLYNFYPLMAG → PAQAFYTYQYFCQATGSTHG
     1087-1133: Missing.
Note: No experimental confirmation available.
Isoform 3 (identifier: Q7Z392-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1067-1086: RILPGTEQEMLYNFYPLMAG → PAQAFYTYQYFCQATGSTHG
     1087-1133: Missing.
Note: No experimental confirmation available.
Isoform 4 (identifier: Q7Z392-4)

The sequence of this isoform differs from the canonical sequence as follows:
     962-1018: CFCLQCPSLG...VENIPLHVNA → LYYLLEKDLS...VVTCQVSPTE
     1019-1133: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11331133Trafficking protein particle complex subunit 11
PRO_0000348072

Amino acid modifications

Modified residue2451N6-acetyllysine Ref.6

Natural variations

Alternative sequence1 – 656656Missing in isoform 2.
VSP_035095
Alternative sequence962 – 101857CFCLQ…LHVNA → LYYLLEKDLSNGEYPHHHNC HHSAARDCGEYPSPCECRSA VIWACQRVVTCQVSPTE in isoform 4.
VSP_035096
Alternative sequence1019 – 1133115Missing in isoform 4.
VSP_035097
Alternative sequence1067 – 108620RILPG…PLMAG → PAQAFYTYQYFCQATGSTHG in isoform 2 and isoform 3.
VSP_035098
Alternative sequence1087 – 113347Missing in isoform 2 and isoform 3.
VSP_035099

Experimental info

Sequence conflict701T → A in AAH51724. Ref.2
Sequence conflict1971Q → L in AAH51724. Ref.2
Sequence conflict3121S → F in AAH51724. Ref.2
Sequence conflict3971W → R in BAG37533. Ref.3
Sequence conflict4671K → E in AAH51724. Ref.2
Sequence conflict5441N → K in BAB15617. Ref.3
Sequence conflict6601V → L in AAH51724. Ref.2
Sequence conflict6611P → L in BAB15617. Ref.3
Sequence conflict6971R → K in CAG38584. Ref.4
Sequence conflict723 – 74422Missing in BAB14556. Ref.3
Sequence conflict8121T → P in CAD91169. Ref.1
Sequence conflict8121T → P in CAG38584. Ref.4
Sequence conflict8121T → P in CAB66686. Ref.5
Sequence conflict8421Y → C in BAB15617. Ref.3
Sequence conflict8651V → I in BAB14240. Ref.3
Sequence conflict8691E → G in BAB14556. Ref.3
Sequence conflict10111N → S in BAB14240. Ref.3
Sequence conflict10301L → S in BAB14556. Ref.3
Sequence conflict11121I → L in CAD97983. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified September 2, 2008. Version 2.
Checksum: 6048FB396E946D4A

FASTA1,133128,881
        10         20         30         40         50         60 
MSPTQWDFPV ELCCRPMAFV TLTGLDVVYN AVHRAVWDAF CANRRADRVP ISFKVLPGDH 

        70         80         90        100        110        120 
EYPKCRPKRT SYEWYIPKGI LKTGWMNKHL NLVPALVVVF YELDWDEPQW KEKQSECATR 

       130        140        150        160        170        180 
VEIVRQSLQG RNTKVAVVLI QKKTPLPPGE DVIASERAAA LCNACELSGK SLFVLPHTDH 

       190        200        210        220        230        240 
LVGYIIRLEN AFYEHAQTYY YTEIRRVKSH KEFLNKTTHQ LLFVRHQFKI AFFSELKQDT 

       250        260        270        280        290        300 
QNALKNYRTA YNLVHELRAH ETNILEIKTM AGFINYKICR LCFQHNTPLD AIAQFRKHID 

       310        320        330        340        350        360 
LCKKKIGSAE LSFEHDAWMS KQFQAFGDLF DEAIKLGLTA IQTQNPGFYY QQAAYYAQER 

       370        380        390        400        410        420 
KQLAKTLCNH EASVMYPNPD PLETQTGVLD FYGQRSWRQG ILSFDLSDPE KEKVGILAIQ 

       430        440        450        460        470        480 
LKERNVVHSE IIITLLSNAV AQFKKYKCPR MKSHLMVQMG EEYYYAKDYT KALKLLDYVM 

       490        500        510        520        530        540 
CDYRSEGWWT LLTSVLTTAL KCSYLMAQLK DYITYSLELL GRASTLKDDQ KSRIEKNLIN 

       550        560        570        580        590        600 
VLMNESPDPE PDCDILAVKT AQKLWADRIS LAGSNIFTIG VQDFVPFVQC KAKFHAPSFH 

       610        620        630        640        650        660 
VDVPVQFDIY LKADCPHPIR FSKLCVSFNN QEYNQFCVIE EASKANEVLE NLTQGKMCLV 

       670        680        690        700        710        720 
PGKTRKLLFK FVAKTEDVGK KIEITSVDLA LGNETGRCVV LNWQGGGGDA ASSQEALQAA 

       730        740        750        760        770        780 
RSFKRRPKLP DNEVHWDSII IQASTMIISR VPNISVHLLH EPPALTNEMY CLVVTVQSHE 

       790        800        810        820        830        840 
KTQIRDVKLT AGLKPGQDAN LTQKTHVTLH GTELCDESYP ALLTDIPVGD LHPGEQLEKM 

       850        860        870        880        890        900 
LYVRCGTVGS RMFLVYVSYL INTTVEEKEI VCKCHKDETV TIETVFPFDV AVKFVSTKFE 

       910        920        930        940        950        960 
HLERVYADIP FLLMTDLLSA SPWALTIVSS ELQLAPSMTT VDQLESQVDN VILQTGESAS 

       970        980        990       1000       1010       1020 
ECFCLQCPSL GNIEGGVATG HYIISWKRTS AMENIPIITT VITLPHVIVE NIPLHVNADL 

      1030       1040       1050       1060       1070       1080 
PSFGRVRESL PVKYHLQNKT DLVQDVEISV EPSDAFMFSG LKQIRLRILP GTEQEMLYNF 

      1090       1100       1110       1120       1130 
YPLMAGYQQL PSLNINLLRF PNFTNQLLRR FIPTSIFVKP QGRLMDDTSI AAA 

« Hide

Isoform 2 [UniParc].

Checksum: 727C5FC79B7310A9
Show »

FASTA43047,632
Isoform 3 [UniParc].

Checksum: 12B530B43141DEFE
Show »

FASTA1,086123,376
Isoform 4 [UniParc].

Checksum: 077A324FCE23D967
Show »

FASTA1,018115,985

References

« Hide 'large scale' references
[1]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 4).
Tissue: Colon epithelium and Endometrium.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3).
Tissue: Testis.
[3]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 199-1133 (ISOFORM 1).
Tissue: Ovary and Trachea.
[4]"Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 319-1133 (ISOFORM 1).
[5]"Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs."
Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. expand/collapse author list , Tampe J., Heubner D., Wambutt R., Korn B., Klein M., Poustka A.
Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 298-1133 (ISOFORM 1).
Tissue: Testis.
[6]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-245, MASS SPECTROMETRY.
[7]"Initial characterization of the human central proteome."
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.
BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[8]"C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking."
Scrivens P.J., Noueihed B., Shahrzad N., Hul S., Brunet S., Sacher M.
Mol. Biol. Cell 22:2083-2093(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: FUNCTION, IDENTIFICATION IN TRAPP COMPLEX.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL833571 mRNA. Translation: CAD91169.1. Different initiation.
BX538044 mRNA. Translation: CAD97983.1. Different initiation.
BC051724 mRNA. Translation: AAH51724.1.
BC139745 mRNA. Translation: AAI39746.1.
AK022778 mRNA. Translation: BAB14240.1. Different initiation.
AK023390 mRNA. Translation: BAB14556.1. Different initiation.
AK026992 mRNA. Translation: BAB15617.1. Sequence problems.
AK315057 mRNA. Translation: BAG37533.1. Different initiation.
CR533553 mRNA. Translation: CAG38584.1.
AL136752 mRNA. Translation: CAB66686.1. Different initiation.
IPIIPI00375684.
IPI00396048.
IPI00412941.
IPI00964845.
RefSeqNP_068761.4. NM_021942.5.
NP_951008.1. NM_199053.2.
UniGeneHs.443240.

3D structure databases

ProteinModelPortalQ7Z392.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-48282N.
IntActQ7Z392. 2 interactions.

PTM databases

PhosphoSiteQ7Z392.

Polymorphism databases

DMDM205696378.

Proteomic databases

PaxDbQ7Z392.
PRIDEQ7Z392.

Protocols and materials databases

DNASU60684.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000334690; ENSP00000335371; ENSG00000168538.
ENST00000357207; ENSP00000349738; ENSG00000168538.
GeneID60684.
KEGGhsa:60684.
UCSCuc003ivw.3. human.
uc003ivx.3. human.
uc010isc.3. human.

Organism-specific databases

CTD60684.
GeneCardsGC04P184581.
H-InvDBHIX0004658.
HGNCHGNC:25751. TRAPPC11.
HPAHPA045427.
MIM614138. gene.
neXtProtNX_Q7Z392.
PharmGKBPA162379849.
GenAtlasSearch...

Phylogenomic databases

eggNOGNOG81047.
HOVERGENHBG107625.
InParanoidQ7Z392.
OMARSWRQGI.
OrthoDBEOG4B8JC8.

Gene expression databases

ArrayExpressQ7Z392.
BgeeQ7Z392.
CleanExHS_C4orf41.
GenevestigatorQ7Z392.

Family and domain databases

InterProIPR012880. DUF1683_C.
IPR021773. Foie-gras_1.
[Graphical view]
PfamPF11817. Foie-gras_1. 1 hit.
PF07919. Gryzun. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

GenomeRNAi60684.
NextBio65514.
SOURCESearch...

Entry information

Entry nameTPC11_HUMAN
AccessionPrimary (citable) accession number: Q7Z392
Secondary accession number(s): A4QPB8 expand/collapse secondary AC list , B2RCD6, Q5U5I7, Q6FI73, Q86T25, Q9H0L1, Q9H5K9, Q9H8Q1, Q9H9I7
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: September 2, 2008
Last modified: April 3, 2013
This is version 69 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Human chromosome 4

Human chromosome 4: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families