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Protein

Pentatricopeptide repeat-containing protein At3g57430, chloroplastic

Gene

PCMP-H81

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Involved in RNA editing events in chloroplasts. Required for the editing of a single site in ndhB and ndhF transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Required for the editing of a single site in psbZ. Required for optimal activity of the NDH complex of the photosynthetic electron transport chain.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA processing Source: TAIR
  • mRNA processing Source: UniProtKB-KW
  • RNA modification Source: GO_Central

Keywordsi

Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g57430, chloroplastic
Alternative name(s):
Protein ORGANELLE TRANSCRIPT PROCESSING 841 Publication
Gene namesi
Name:PCMP-H81
Synonyms:OTP841 Publication
Ordered Locus Names:At3g57430
ORF Names:T8H10.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G57430.
TAIRilocus:2103483. AT3G57430.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth conditions.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 44ChloroplastSequence analysisAdd BLAST44
ChainiPRO_000035614445 – 890Pentatricopeptide repeat-containing protein At3g57430, chloroplasticSequence analysisAdd BLAST846

Proteomic databases

PaxDbiQ7Y211.

Expressioni

Gene expression databases

GenevisibleiQ7Y211. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G57430.1.

Structurei

3D structure databases

ProteinModelPortaliQ7Y211.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati61 – 95PPR 1Add BLAST35
Repeati96 – 130PPR 2Add BLAST35
Repeati132 – 162PPR 3Add BLAST31
Repeati163 – 197PPR 4Add BLAST35
Repeati198 – 231PPR 5Add BLAST34
Repeati235 – 265PPR 6Add BLAST31
Repeati266 – 300PPR 7Add BLAST35
Repeati301 – 335PPR 8Add BLAST35
Repeati337 – 371PPR 9Add BLAST35
Repeati372 – 398PPR 10Add BLAST27
Repeati404 – 438PPR 11Add BLAST35
Repeati439 – 473PPR 12Add BLAST35
Repeati474 – 504PPR 13Add BLAST31
Repeati516 – 550PPR 14Add BLAST35
Repeati551 – 581PPR 15Add BLAST31
Repeati582 – 616PPR 16Add BLAST35
Repeati617 – 652PPR 17Add BLAST36
Repeati653 – 683PPR 18Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni689 – 764Type E motifAdd BLAST76
Regioni765 – 795Type E(+) motifAdd BLAST31
Regioni796 – 890Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237570.
InParanoidiQ7Y211.
OMAiLCLFRRW.
OrthoDBiEOG0936021K.
PhylomeDBiQ7Y211.

Family and domain databases

Gene3Di1.25.40.10. 5 hits.
InterProiView protein in InterPro
IPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom_sf.
PfamiView protein in Pfam
PF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 6 hits.
PF13041. PPR_2. 3 hits.
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR00756. PPR. 4 hits.
PROSITEiView protein in PROSITE
PS51375. PPR. 17 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q7Y211-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCPLAFTFS LPSIFPFPSQ LLPFSRHKHP YLLRATPTSA TEDVASAVSG
60 70 80 90 100
APSIFISQSR SPEWWIDLLR SKVRSNLLRE AVLTYVDMIV LGIKPDNYAF
110 120 130 140 150
PALLKAVADL QDMELGKQIH AHVYKFGYGV DSVTVANTLV NLYRKCGDFG
160 170 180 190 200
AVYKVFDRIS ERNQVSWNSL ISSLCSFEKW EMALEAFRCM LDENVEPSSF
210 220 230 240 250
TLVSVVTACS NLPMPEGLMM GKQVHAYGLR KGELNSFIIN TLVAMYGKLG
260 270 280 290 300
KLASSKVLLG SFGGRDLVTW NTVLSSLCQN EQLLEALEYL REMVLEGVEP
310 320 330 340 350
DEFTISSVLP ACSHLEMLRT GKELHAYALK NGSLDENSFV GSALVDMYCN
360 370 380 390 400
CKQVLSGRRV FDGMFDRKIG LWNAMIAGYS QNEHDKEALL LFIGMEESAG
410 420 430 440 450
LLANSTTMAG VVPACVRSGA FSRKEAIHGF VVKRGLDRDR FVQNTLMDMY
460 470 480 490 500
SRLGKIDIAM RIFGKMEDRD LVTWNTMITG YVFSEHHEDA LLLLHKMQNL
510 520 530 540 550
ERKVSKGASR VSLKPNSITL MTILPSCAAL SALAKGKEIH AYAIKNNLAT
560 570 580 590 600
DVAVGSALVD MYAKCGCLQM SRKVFDQIPQ KNVITWNVII MAYGMHGNGQ
610 620 630 640 650
EAIDLLRMMM VQGVKPNEVT FISVFAACSH SGMVDEGLRI FYVMKPDYGV
660 670 680 690 700
EPSSDHYACV VDLLGRAGRI KEAYQLMNMM PRDFNKAGAW SSLLGASRIH
710 720 730 740 750
NNLEIGEIAA QNLIQLEPNV ASHYVLLANI YSSAGLWDKA TEVRRNMKEQ
760 770 780 790 800
GVRKEPGCSW IEHGDEVHKF VAGDSSHPQS EKLSGYLETL WERMRKEGYV
810 820 830 840 850
PDTSCVLHNV EEDEKEILLC GHSEKLAIAF GILNTSPGTI IRVAKNLRVC
860 870 880 890
NDCHLATKFI SKIVDREIIL RDVRRFHRFK NGTCSCGDYW
Length:890
Mass (Da):99,276
Last modified:December 16, 2008 - v2
Checksum:i3183E11DC3EBCED1
GO

Sequence cautioni

The sequence CAB66100 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti17F → L in AAP40452 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL133248 Genomic DNA. Translation: CAB66100.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE79654.1.
BT008634 mRNA. Translation: AAP40452.1.
PIRiT46179.
RefSeqiNP_191302.2. NM_115603.4.
UniGeneiAt.34834.

Genome annotation databases

EnsemblPlantsiAT3G57430.1; AT3G57430.1; AT3G57430.
GeneIDi824910.
GrameneiAT3G57430.1; AT3G57430.1; AT3G57430.
KEGGiath:AT3G57430.

Similar proteinsi

Entry informationi

Entry nameiPP285_ARATH
AccessioniPrimary (citable) accession number: Q7Y211
Secondary accession number(s): Q9SCM9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: November 22, 2017
This is version 84 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families