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Protein

Histone deacetylase

Gene

P0498C03.28-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
Name:P0498C03.28-1Imported
Ordered Locus Names:Os06g0583400Imported
ORF Names:OSNPB_060583400Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 6

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os06g38470.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini41 – 328288Hist_deacetylInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
HOGENOMiHOG000225180.
KOiK06067.
OMAiVSIRAHD.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

Q7Y0Y8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDASAGGGGN SLPTAGADGA KRRVCYFYDA EVGNYYYGQG HPMKPHRIRM
60 70 80 90 100
THALLAHYGL LDQMQVLKPH PARDRDLCRF HADDYVAFLR SVTPETQQDQ
110 120 130 140 150
IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG
160 170 180 190 200
LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
210 220 230 240 250
TTDRVMTVSF HKFGDYFPGT GDIRDIGHSK GKYYSLNVPL DDGIDDESYQ
260 270 280 290 300
SLFKPIMGKV MEVFRPGAVV LQCGADSLSG DRLGCFNLSI RGHAECVRFM
310 320 330 340 350
RSFNVPLLLL GGGGYTIRNV ARCWCYETGV ALGHELTDKM PPNEYFEYFG
360 370 380 390 400
PDYTLHVAPS NMENKNTRQQ LDDIRSRLLD NLSKLRHAPS VQFQERPPEA
410 420 430 440 450
ELPEQDEDQE DPDERHHADS DVEMDDVKPL DDSGRRSSIQ NVRVKRESAE
460 470 480 490 500
TDAADQDGNR VAAENTKGTE PAADGVGSSK QTVPTDASAM AIDEPGSLKV
510
EPDNSNKLQD QPSVHQKT
Length:518
Mass (Da):57,506
Last modified:October 1, 2003 - v1
Checksum:i2179EA9ED8D09EA4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF513382 mRNA. Translation: AAP47171.1.
AP003724 Genomic DNA. Translation: BAD68730.1.
AP008212 Genomic DNA. Translation: BAF19857.1.
AK068682 mRNA. Translation: BAG91027.1.
AP014962 Genomic DNA. Translation: BAS98377.1.
RefSeqiXP_015643781.1. XM_015788295.1.
UniGeneiOs.10708.

Genome annotation databases

EnsemblPlantsiOS06T0583400-01; OS06T0583400-01; OS06G0583400.
GeneIDi4341387.
GrameneiOS06T0583400-01; OS06T0583400-01; OS06G0583400.
KEGGiosa:4341387.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF513382 mRNA. Translation: AAP47171.1.
AP003724 Genomic DNA. Translation: BAD68730.1.
AP008212 Genomic DNA. Translation: BAF19857.1.
AK068682 mRNA. Translation: BAG91027.1.
AP014962 Genomic DNA. Translation: BAS98377.1.
RefSeqiXP_015643781.1. XM_015788295.1.
UniGeneiOs.10708.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os06g38470.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS06T0583400-01; OS06T0583400-01; OS06G0583400.
GeneIDi4341387.
GrameneiOS06T0583400-01; OS06T0583400-01; OS06G0583400.
KEGGiosa:4341387.

Phylogenomic databases

eggNOGiKOG1342. Eukaryota.
COG0123. LUCA.
HOGENOMiHOG000225180.
KOiK06067.
OMAiVSIRAHD.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, PAC clone:P0498C03."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Characterization of rice histone deacetylase, OsHDAC1."
    Jang I.-C., Pahk Y.-M., Song S.I., Nahm B.H., Kim J.-K.
    Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: CallusImported.
  3. "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
    Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.
    , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
    Science 301:376-379(2003)
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  5. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "The Second Rice Annotation Project Meeting (RAP2)."
    The Rice Annotation Project (RAP)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
    Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
    Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  8. "Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
    The Rice Annotation Project (RAP)
    Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E.
    , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
    Genome Res. 17:175-183(2007)
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "The Rice Annotation Project Database (RAP-DB): 2008 update."
    The Rice Annotation Project (RAP)
    Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.
    , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
    Nucleic Acids Res. 36:D1028-D1033(2008)
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics."
    Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.
    Plant Cell Physiol. 54:E6-E6(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  12. Millard Andrew
    Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ7Y0Y8_ORYSJ
AccessioniPrimary (citable) accession number: Q7Y0Y8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: June 8, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.