Q7Y0Y6 (Q7Y0Y6_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Histone deacetylase PIRNR PIRNR037913
EC=3.5.1.98 PIRNR PIRNR037913

Gene names

Name:	OJ1006_D05.27-1 EMBL BAD25048.1
Ordered Locus Names:	Os02g0214900 EMBL BAF08198.1

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome] EMBL AAP47173.1

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	510 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913
Subcellular location	Nucleus By similarity PIRNR PIRNR037913.
Sequence similarities	Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Ontologies

Keywords
Biological process	Transcription Transcription regulation PIRNR PIRNR037913
Cellular component	Nucleus PIRNR PIRNR037913
Molecular function	Chromatin regulator PIRNR PIRNR037913 Hydrolase SAAS SAAS000286 PIRNR PIRNR037913
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA mediated transformation Inferred from electronic annotation. Source: EnsemblPlants/Gramene histone H3 deacetylation Inferred from electronic annotation. Source: GOC histone H4 deacetylation Inferred from electronic annotation. Source: GOC histone acetylation Inferred from electronic annotation. Source: EnsemblPlants/Gramene jasmonic acid and ethylene-dependent systemic resistance Inferred from electronic annotation. Source: EnsemblPlants/Gramene regulation of multicellular organismal development Inferred from electronic annotation. Source: EnsemblPlants/Gramene regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	NAD-dependent histone deacetylase activity (H3-K14 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H3-K18 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H3-K9 specific) Inferred from electronic annotation. Source: EC NAD-dependent histone deacetylase activity (H4-K16 specific) Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7Y0Y6 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: 664090CF78C12535	FASTA	510	56,504
	10 20 30 40 50 60 MDPSSAGAGG NSLASASCGD AQKRRVCYFY DPEVGNYYYG QGHPMKPHRV RMTHALLAHY 70 80 90 100 110 120 GLLAPAKMEV LRPLPARGID LCRFHSDDYV AFLRAVTPET QLGQVRALRR FNIGPDCPVF 130 140 150 160 170 180 DGLYAYCQTY AGASVGAAVK LNHGTHDIAI NWSGGLHHAK KSEASGFCYV NDIVLAILEL 190 200 210 220 230 240 LKLHERVLYI DIDIHHGDGV EEAFYTTNRV MTVSFHKFGD YFPGTGDIRD IGYSEGKYYC 250 260 270 280 290 300 LNVPLDDGID DDSYQSIFKP IISKVMEMYR PGAVVLQCGA DSLSGDRLGC FNLSGKGHAE 310 320 330 340 350 360 CVKFMRSFNV PLLLLGGGGY TIRNVARCWC YETGVALGEE LQEKLPYNEY YEYFGPEYSL 370 380 390 400 410 420 YVAASNMENR NTNKQLEEIK CNILDNLSKL QHAPSVQFQE RIPETKLPEP DEDQEDPDER 430 440 450 460 470 480 HDPDSDMVLD DHKPTGHSAR SLIHNIGVKR EITETETKDQ HGKRLTTEHK GPEPMAEDLG 490 500 510 SSKQAPTADA NAVAVNAPGN ARNEPGSSPK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1006_D05." Sasaki T., Matsumoto T., Yamamoto K. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Characterization of rice histone deacetylase, OsHDAC3." Jang I.-C., Pahk Y.-M., Song S.I., Nahm B.H., Kim J.-K. Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Callus EMBL AAP47173.1.
[3]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"The map-based sequence of the rice genome." International Rice Genome Sequencing Project Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N. , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T. Nature 436:793-800(2005) Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	"The Second Rice Annotation Project Meeting (RAP2)." The Rice Annotation Project (RAP) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	"The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information." Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T. Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[8]	"Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana." The Rice Annotation Project (RAP) Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E. , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T. Genome Res. 17:175-183(2007) Cited for: NUCLEOTIDE SEQUENCE.
[9]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[10]	"The Rice Annotation Project Database (RAP-DB): 2008 update." The Rice Annotation Project (RAP) Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H. , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M. Nucleic Acids Res. 36:D1028-D1033(2008) Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF513384 mRNA. Translation: AAP47173.1. AP004039 Genomic DNA. Translation: BAD25048.1. AP008208 Genomic DNA. Translation: BAF08198.1.
RefSeq	NP_001046284.1. NM_001052819.1.
UniGene	Os.79864.
3D structure databases
HSSP	HSSP built from PDB template 1C3R based on UniProtKB O67135.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os02g12350.1; LOC_Os02g12350.1; LOC_Os02g12350.
GeneID	4328717.
KEGG	osa:4328717.
Phylogenomic databases
KO	K06067.
OMA	PGNARNE.
ProtClustDB	CLSN2685384.
Family and domain databases
Gene3D	3.40.800.20. 1 hit.
InterPro	IPR000286. His_deacetylse. IPR003084. His_deacetylse_1. IPR023801. His_deacetylse_dom. [Graphical view]
PANTHER	PTHR10625. PTHR10625. 1 hit.
Pfam	PF00850. Hist_deacetyl. 1 hit. [Graphical view]
PIRSF	PIRSF037913. His_deacetylse_1. 1 hit.
PRINTS	PR01270. HDASUPER. PR01271. HISDACETLASE.
ProtoNet	Search...

Entry information

Entry name

Q7Y0Y6_ORYSJ

Accession

Primary (citable) accession number: Q7Y0Y6

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	May 1, 2013
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)