Reviewed, UniProtKB/Swiss-Prot Q7XXL2 (4CLL9_ORYSJ)

Names and origin

Protein names

Recommended name:
    4-coumarate--CoA ligase-like 9
    EC=6.2.1.-

Gene names

Name:	4CLL9
Ordered Locus Names:	Os04g0310700, LOC_Os04g24530
ORF Names:	OSJNBa0033H08.6, OsJ_013660

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	555 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Domain	Both substrate-binding domains (SBD1 and SBD2) are involved in the substrate recognition, and are sufficient to confer the substrate specificity.
Sequence similarities	Belongs to the ATP-dependent AMP-binding enzyme family.
Sequence caution	The sequence BAF14350.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Ligand	ATP-binding Nucleotide-binding
Molecular function	Ligase
Gene Ontology (GO)
Biological process	metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ligase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 555	555	4-coumarate--CoA ligase-like 9		PRO_0000351635
Regions
	Region	271 – 342	72	SBD1
	Region	343 – 410	68	SBD2
Experimental info
	Sequence conflict	420	1	T → M in AK242522. Ref.5

Sequences

	Sequence		Length	Mass (Da)
	Q7XXL2-1 [UniParc]. Last modified March 1, 2004. Version 2. Checksum: F9CD096E1A4A3E1E	FASTA	555	59,420
	10 20 30 40 50 60 MGDAAVPAMV VEEEEQEHVF RSRFPPVAVP DGVTVPEFVL DGAEAYADRV ALVEAAAGGR 70 80 90 100 110 120 SYTYGEVARD TARFARALRS VGVRKGHVVV VALPNLAVYP VVSLGIMSAG AVFSGVNPRA 130 140 150 160 170 180 LAAEIKKQVE DSEAKLVVAN EVAFDKVKDA GVPVIGVGDR ERMPGAISWD GLLAAADRTG 190 200 210 220 230 240 AGVVPVDAAQ QSDLCALPYS SGTTGVSKGV MLSHRNLVSN LCSSMFAVAP ETAGQVVTLG 250 260 270 280 290 300 LMPFFHIYGI TGICCATLRH KGTVVVMDRF DLRTFLRALV DHRVMFAPLV PPVMLAMVKS 310 320 330 340 350 360 PVADEFDLSD LALKSVMTAA APLAPDLLAA FQRKFPGVQV EEAYGLTEHS CITLTHAAGD 370 380 390 400 410 420 GHGHVAKKSS VGFILPNLEV KFVDPDTGRS LPANTPGELC VRSQSVMQGY YKRKEETERT 430 440 450 460 470 480 VDGKGWLHTG DVGYIDGDGD VFIVDRIKEL IKYKGFQVAP AELEAVLLSH PSVEDAAVFG 490 500 510 520 530 540 VPDEEAGEVP VACVVRRHGA EEGEEEIVAY VAERVASYKR VRVLHIVDAI PKSVSGKILR 550 RQLRDEFIKR MKPSA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B. Nature 420:316-320(2002) [PubMed: 12447439] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[5]	"Oryza sativa full length cDNA." The rice full-length cDNA consortium Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 420-555. Strain: cv. Nipponbare.
[6]	"Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella." de Azevedo Souza C., Barbazuk B., Ralph S.G., Bohlmann J., Hamberger B., Douglas C.J. New Phytol. 179:987-1003(2008) [PubMed: 18627494] [Abstract] Cited for: GENE FAMILY.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AL662942 Genomic DNA. Translation: CAD37124.3. AP008210 Genomic DNA. Translation: BAF14350.1. Sequence problems. CM000141 Genomic DNA. Translation: EAZ30177.1. AK242522 mRNA. No translation available.
RefSeq	NP_001052436.1.
UniGene	Os.78676
3D structure databases
HSSP	HSSP built from PDB template 1BA3 based on UniProtKB P08659.
ModBase	Search...
Genome annotation databases
GeneID	4335451.
KEGG	osa:4335451.
Organism-specific databases
Gramene	Q7XXL2.
Family and domain databases
InterPro	IPR000873. AMP-dep_Synth/Lig. [Graphical view]
Pfam	PF00501. AMP-binding. 1 hit. [Graphical view]
PROSITE	PS00455. AMP_BINDING. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

4CLL9_ORYSJ

Accession

Primary (citable) accession number: Q7XXL2
Secondary accession number(s): Q0JE87

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 14, 2008
Last sequence update:	March 1, 2004
Last modified:	May 26, 2009
This is version 36 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)