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Q7XVF9

- P2C39_ORYSJ

UniProt

Q7XVF9 - P2C39_ORYSJ

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Protein

Probable protein phosphatase 2C 39

Gene

Os04g0403701

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi195 – 1951Manganese 1By similarity
Metal bindingi195 – 1951Manganese 2By similarity
Metal bindingi196 – 1961Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi435 – 4351Manganese 2By similarity
Metal bindingi498 – 4981Manganese 2By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. phosphoprotein phosphatase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 39 (EC:3.1.3.16)
Short name:
OsPP2C39
Gene namesi
Ordered Locus Names:Os04g0403701, LOC_Os04g33080
ORF Names:OJ000315_02.1, OsJ_014105, OSJNBb0118P14.8
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 4

Organism-specific databases

GrameneiQ7XVF9.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 520520Probable protein phosphatase 2C 39PRO_0000363286Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ7XVF9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini154 – 483330PP2C-likeAdd
BLAST

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PP2C-like domain.Curated

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000240776.
InParanoidiQ7XVF9.
OMAiENPLEYQ.

Family and domain databases

Gene3Di3.60.40.10. 2 hits.
InterProiIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 2 hits.

Sequencei

Sequence statusi: Complete.

Q7XVF9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVDEELFDKS SNDHSISSEE EDMLVRSYSN LNVSFGYHCN SYQCFSLDTD
60 70 80 90 100
EYDISPNKRL ETNTMMTSQN GSFTCLSGAA ISANFTLANT NICKGLIGEE
110 120 130 140 150
ILPELDSPNS FRKIVSSPSM SRLDLLSTSQ GSPVSTESSI FEISKNIWRS
160 170 180 190 200
SAPTTVSSNF LTSTEIKMAG GAAGEDRVQA VCSEKNGWLI CGIYDGFNGR
210 220 230 240 250
DAADFLAVTL YDNIVYYLYL LECRIKQENG LYGSPEGSLN GVKSELTLAM
260 270 280 290 300
RFAENEDVKF SETFRAGVLK CLTTAVEQAE NDFLCMVEQE MDDRPDLVSV
310 320 330 340 350
GSCVLVVLLH GTDLCILNLG DSRAVLASVP SSGMDKLKAV QLTEIHSLEN
360 370 380 390 400
PLEYQKLLAD HPNEPSVVMG NKIKGKLKVT RAFGVGYLKQ KKLNDALMGI
410 420 430 440 450
LRVRNLCSPP YVYTNPHTVS HKVTEDDLFV VLGSDGLFDF FSNDEVVQLV
460 470 480 490 500
YQFMHDNPIG DPAKYLIEQL LLKAAKEAAL TAEELMRIPV GSRRKYHDDV
510 520
TIIVIILGNA QRTMTASTSL
Length:520
Mass (Da):57,320
Last modified:March 1, 2004 - v2
Checksum:iCCBCB18D3B94E4DB
GO

Sequence cautioni

The sequence BAF14614.2 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL607005 Genomic DNA. Translation: CAD40677.2.
AL731639 Genomic DNA. Translation: CAE05356.1.
AP008210 Genomic DNA. Translation: BAF14614.2. Sequence problems.
CM000141 Genomic DNA. Translation: EAZ30622.1.
AK243107 mRNA. Translation: BAH01452.1.
RefSeqiNP_001052700.2. NM_001059235.2.
UniGeneiOs.12150.

Genome annotation databases

EnsemblPlantsiOS04T0403701-01; OS04T0403701-01; OS04G0403701.
GeneIDi4335740.
KEGGiosa:4335740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL607005 Genomic DNA. Translation: CAD40677.2 .
AL731639 Genomic DNA. Translation: CAE05356.1 .
AP008210 Genomic DNA. Translation: BAF14614.2 . Sequence problems.
CM000141 Genomic DNA. Translation: EAZ30622.1 .
AK243107 mRNA. Translation: BAH01452.1 .
RefSeqi NP_001052700.2. NM_001059235.2.
UniGenei Os.12150.

3D structure databases

ProteinModelPortali Q7XVF9.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS04T0403701-01 ; OS04T0403701-01 ; OS04G0403701 .
GeneIDi 4335740.
KEGGi osa:4335740.

Organism-specific databases

Gramenei Q7XVF9.

Phylogenomic databases

eggNOGi COG0631.
HOGENOMi HOG000240776.
InParanoidi Q7XVF9.
OMAi ENPLEYQ.

Family and domain databases

Gene3Di 3.60.40.10. 2 hits.
InterProi IPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view ]
PANTHERi PTHR13832. PTHR13832. 1 hit.
Pfami PF00481. PP2C. 1 hit.
[Graphical view ]
SMARTi SM00332. PP2Cc. 1 hit.
[Graphical view ]
SUPFAMi SSF81606. SSF81606. 2 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Oryza sativa full length cDNA."
    The rice full-length cDNA consortium
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C39_ORYSJ
AccessioniPrimary (citable) accession number: Q7XVF9
Secondary accession number(s): Q0JDH3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2004
Last modified: November 26, 2014
This is version 68 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3