Q7XVF9 (P2C39_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable protein phosphatase 2C 39
Short name=OsPP2C39
EC=3.1.3.16

Gene names

Ordered Locus Names:	Os04g0403701, LOC_Os04g33080
ORF Names:	OJ000315_02.1, OsJ_014105, OSJNBb0118P14.8

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	520 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	A phosphoprotein + H2O = a protein + phosphate.
Cofactor	Binds 2 magnesium or manganese ions per subunit By similarity.
Sequence similarities	Belongs to the PP2C family. Contains 1 PP2C-like domain.
Sequence caution	The sequence BAF14614.2 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Ligand	Magnesium Manganese Metal-binding
Molecular function	Hydrolase Protein phosphatase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	metabolic process Inferred from electronic annotation. Source: GOC
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW phosphoprotein phosphatase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 520	520	Probable protein phosphatase 2C 39		PRO_0000363286
Regions
	Domain	154 – 483	330	PP2C-like
Sites
	Metal binding	195	1	Manganese 1 By similarity
	Metal binding	195	1	Manganese 2 By similarity
	Metal binding	196	1	Manganese 1; via carbonyl oxygen By similarity
	Metal binding	435	1	Manganese 2 By similarity
	Metal binding	498	1	Manganese 2 By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q7XVF9 [UniParc]. Last modified March 1, 2004. Version 2. Checksum: CCBCB18D3B94E4DB	FASTA	520	57,320
	10 20 30 40 50 60 MVDEELFDKS SNDHSISSEE EDMLVRSYSN LNVSFGYHCN SYQCFSLDTD EYDISPNKRL 70 80 90 100 110 120 ETNTMMTSQN GSFTCLSGAA ISANFTLANT NICKGLIGEE ILPELDSPNS FRKIVSSPSM 130 140 150 160 170 180 SRLDLLSTSQ GSPVSTESSI FEISKNIWRS SAPTTVSSNF LTSTEIKMAG GAAGEDRVQA 190 200 210 220 230 240 VCSEKNGWLI CGIYDGFNGR DAADFLAVTL YDNIVYYLYL LECRIKQENG LYGSPEGSLN 250 260 270 280 290 300 GVKSELTLAM RFAENEDVKF SETFRAGVLK CLTTAVEQAE NDFLCMVEQE MDDRPDLVSV 310 320 330 340 350 360 GSCVLVVLLH GTDLCILNLG DSRAVLASVP SSGMDKLKAV QLTEIHSLEN PLEYQKLLAD 370 380 390 400 410 420 HPNEPSVVMG NKIKGKLKVT RAFGVGYLKQ KKLNDALMGI LRVRNLCSPP YVYTNPHTVS 430 440 450 460 470 480 HKVTEDDLFV VLGSDGLFDF FSNDEVVQLV YQFMHDNPIG DPAKYLIEQL LLKAAKEAAL 490 500 510 520 TAEELMRIPV GSRRKYHDDV TIIVIILGNA QRTMTASTSL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B. Nature 420:316-320(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[5]	"Oryza sativa full length cDNA." The rice full-length cDNA consortium Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[6]	"Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis." Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y. BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL607005 Genomic DNA. Translation: CAD40677.2. AL731639 Genomic DNA. Translation: CAE05356.1. AP008210 Genomic DNA. Translation: BAF14614.2. Sequence problems. CM000141 Genomic DNA. Translation: EAZ30622.1. AK243107 mRNA. Translation: BAH01452.1.
RefSeq	NP_001052700.2. NM_001059235.2.
UniGene	Os.12150.
3D structure databases
ProteinModelPortal	Q7XVF9.
ModBase	Search...
Protein family/group databases
CAZy	GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os04g33080.1; LOC_Os04g33080.1; LOC_Os04g33080. LOC_Os04g33080.2; LOC_Os04g33080.2; LOC_Os04g33080. LOC_Os04g33080.3; LOC_Os04g33080.3; LOC_Os04g33080.
GeneID	4335740.
KEGG	osa:4335740.
Organism-specific databases
Gramene	Q7XVF9.
Phylogenomic databases
eggNOG	COG0631.
HOGENOM	HOG000240776.
OMA	ICNGVIG.
ProtClustDB	CLSN2688452.
Gene expression databases
ArrayExpress	Q7XVF9.
Family and domain databases
Gene3D	3.60.40.10. 2 hits.
InterPro	IPR001932. PP2C-like. IPR015655. Protein_Pase_2C. [Graphical view]
PANTHER	PTHR13832. PTHR13832. 1 hit.
Pfam	PF00481. PP2C. 1 hit. [Graphical view]
SMART	SM00332. PP2Cc. 1 hit. [Graphical view]
SUPFAM	SSF81606. PP2C-related. 1 hit.
PROSITE	PS01032. PP2C. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

P2C39_ORYSJ

Accession

Primary (citable) accession number: Q7XVF9
Secondary accession number(s): Q0JDH3

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 10, 2009
Last sequence update:	March 1, 2004
Last modified:	April 3, 2013
This is version 58 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program