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Q7XVF9 (P2C39_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable protein phosphatase 2C 39

Short name=OsPP2C39
EC=3.1.3.16
Gene names
Ordered Locus Names:Os04g0403701, LOC_Os04g33080
ORF Names:OJ000315_02.1, OsJ_014105, OSJNBb0118P14.8
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length520 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the PP2C family.

Contains 1 PP2C-like domain.

Sequence caution

The sequence BAF14614.2 differs from that shown. Reason: Erroneous gene model prediction.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 520520Probable protein phosphatase 2C 39
PRO_0000363286

Regions

Domain154 – 483330PP2C-like

Sites

Metal binding1951Manganese 1 By similarity
Metal binding1951Manganese 2 By similarity
Metal binding1961Manganese 1; via carbonyl oxygen By similarity
Metal binding4351Manganese 2 By similarity
Metal binding4981Manganese 2 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q7XVF9 [UniParc].

Last modified March 1, 2004. Version 2.
Checksum: CCBCB18D3B94E4DB

FASTA52057,320
        10         20         30         40         50         60 
MVDEELFDKS SNDHSISSEE EDMLVRSYSN LNVSFGYHCN SYQCFSLDTD EYDISPNKRL 

        70         80         90        100        110        120 
ETNTMMTSQN GSFTCLSGAA ISANFTLANT NICKGLIGEE ILPELDSPNS FRKIVSSPSM 

       130        140        150        160        170        180 
SRLDLLSTSQ GSPVSTESSI FEISKNIWRS SAPTTVSSNF LTSTEIKMAG GAAGEDRVQA 

       190        200        210        220        230        240 
VCSEKNGWLI CGIYDGFNGR DAADFLAVTL YDNIVYYLYL LECRIKQENG LYGSPEGSLN 

       250        260        270        280        290        300 
GVKSELTLAM RFAENEDVKF SETFRAGVLK CLTTAVEQAE NDFLCMVEQE MDDRPDLVSV 

       310        320        330        340        350        360 
GSCVLVVLLH GTDLCILNLG DSRAVLASVP SSGMDKLKAV QLTEIHSLEN PLEYQKLLAD 

       370        380        390        400        410        420 
HPNEPSVVMG NKIKGKLKVT RAFGVGYLKQ KKLNDALMGI LRVRNLCSPP YVYTNPHTVS 

       430        440        450        460        470        480 
HKVTEDDLFV VLGSDGLFDF FSNDEVVQLV YQFMHDNPIG DPAKYLIEQL LLKAAKEAAL 

       490        500        510        520 
TAEELMRIPV GSRRKYHDDV TIIVIILGNA QRTMTASTSL 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of rice chromosome 4."
Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. expand/collapse author list , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B.
Nature 420:316-320(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"Oryza sativa full length cDNA."
The rice full-length cDNA consortium
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[6]"Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL607005 Genomic DNA. Translation: CAD40677.2.
AL731639 Genomic DNA. Translation: CAE05356.1.
AP008210 Genomic DNA. Translation: BAF14614.2. Sequence problems.
CM000141 Genomic DNA. Translation: EAZ30622.1.
AK243107 mRNA. Translation: BAH01452.1.
RefSeqNP_001052700.2. NM_001059235.2.
UniGeneOs.12150.

3D structure databases

ProteinModelPortalQ7XVF9.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS04T0403701-01; OS04T0403701-01; OS04G0403701.
GeneID4335740.
KEGGosa:4335740.

Organism-specific databases

GrameneQ7XVF9.

Phylogenomic databases

eggNOGCOG0631.
HOGENOMHOG000240776.
OMAENPLEYQ.
ProtClustDBCLSN2688452.

Family and domain databases

Gene3D3.60.40.10. 2 hits.
InterProIPR001932. PP2C-like_dom.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERPTHR13832. PTHR13832. 1 hit.
PfamPF00481. PP2C. 1 hit.
[Graphical view]
SMARTSM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMSSF81606. SSF81606. 2 hits.
ProtoNetSearch...

Entry information

Entry nameP2C39_ORYSJ
AccessionPrimary (citable) accession number: Q7XVF9
Secondary accession number(s): Q0JDH3
Entry history
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: March 1, 2004
Last modified: April 16, 2014
This is version 64 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations