Q7XUN2 (MAD17_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
MADS-box transcription factor 17

Alternative name(s):
NMADS3
OsMADS17
RMADS213

Gene names

Name:	MADS17
Ordered Locus Names:	Os04g0580700, LOC_Os04g49150
ORF Names:	OSJNBa0064M23.11

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	249 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. Ref.5
Subunit structure	May interact with the K-box of MADS6.
Subcellular location	Nucleus Probable.
Tissue specificity	Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. Ref.5
Disruption phenotype	No visible phenotype, probably due to redundancy with MADS6. Ref.5
Sequence similarities	Contains 1 K-box domain. Contains 1 MADS-box domain.
Sequence caution	The sequence AAK26241.1 differs from that shown. Reason: Frameshift at position 227.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	specification of floral organ identity Inferred from mutant phenotype Ref.5. Source: UniProtKB transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW vegetative to reproductive phase transition of meristem Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 249	249	MADS-box transcription factor 17		PRO_0000229901
Regions
	Domain	1 – 61	61	MADS-box
	Domain	88 – 178	91	K-box
	Compositional bias	234 – 237	4	Poly-Gly
Experimental info
	Sequence conflict	8 – 10	3	LKR → IKS in AAK26241. Ref.4
	Sequence conflict	16	1	N → T in AAK26241. Ref.4

Sequences

	Sequence		Length	Mass (Da)
	Q7XUN2 [UniParc]. Last modified March 1, 2004. Version 2. Checksum: D4D5D46FD2881B4B	FASTA	249	28,184
	10 20 30 40 50 60 MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 70 80 90 100 110 120 GINKTLEKYN SCCYNAQGSN SALAGGEHQS WYQEMSRLKT KLECLQRSQR HMLGEDLGPL 130 140 150 160 170 180 SIKELQQLEK QLEYSLSQAR QRKTQIMMEQ VDDLRRKERQ LGELNKQLKN KLEAEADSSN 190 200 210 220 230 240 CRSAIQDSWV HGTVVSGGRV LNAQPPPDID CEPTLQIGYY QFVRPEAANP RSNGGGGDQN NNFVMGWPL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system." Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G. Plant Physiol. 120:1193-1204(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], INTERACTION WITH MADS6. Tissue: Flower.
[2]	Yao Q., Peng R., Xiong A. Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[3]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B. Nature 420:316-320(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"Cloning and characterization of two cDNAs encoding rice MADS box protein." Yuan Z., Qian X., Liu J., Liu J., Qian M., Yang J. Prog. Nat. Sci. 10:357-363(2000) Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 8-249.
[5]	"MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice." Ohmori S., Kimizu M., Sugita M., Miyao A., Hirochika H., Uchida E., Nagato Y., Yoshida H. Plant Cell 21:3008-3025(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, TISSUE SPECIFICITY, DISRUPTION PHENOTYPE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AF109153 mRNA. Translation: AAF21900.1. AY551918 mRNA. Translation: AAS59824.1. AL606688 Genomic DNA. Translation: CAD41166.2. AF095646 mRNA. Translation: AAK26241.1. Frameshift.
3D structure databases
ProteinModelPortal	Q7XUN2.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q7XUN2. 3 interactions.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
KEGG	dosa:Os04t0580700-01.
Organism-specific databases
Gramene	Q7XUN2.
Phylogenomic databases
eggNOG	COG5068.
Gene expression databases
ArrayExpress	Q7XUN2.
Family and domain databases
InterPro	IPR002487. TF_Kbox. IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF01486. K-box. 1 hit. PF00319. SRF-TF. 1 hit. [Graphical view]
PRINTS	PR00404. MADSDOMAIN.
SMART	SM00432. MADS. 1 hit. [Graphical view]
SUPFAM	SSF55455. TF_MADSbox. 1 hit.
PROSITE	PS51297. K_BOX. 1 hit. PS00350. MADS_BOX_1. 1 hit. PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

MAD17_ORYSJ

Accession

Primary (citable) accession number: Q7XUN2
Secondary accession number(s): Q9AUJ0, Q9SES9

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 4, 2006
Last sequence update:	March 1, 2004
Last modified:	April 3, 2013
This is version 56 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program