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Protein

Histone H4

Gene

OSJNBb0064P21.1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Histone H4UniRule annotation
Gene namesi
Name:OSJNBb0064P21.1Imported
Synonyms:P0534A03.129Imported
Ordered Locus Names:LOC_Os03g02780Imported, LOC_Os10g39410Imported, Os01g0835900Imported, Os02g0684500Imported, Os03g0119900Imported, Os04g0583600Imported, Os05g0462700Imported, Os05g0466600Imported, Os07g0549900Imported, Os09g0433600Imported, Os09g0553100Imported, Os10g0539500Imported
ORF Names:OJ1081_G10.11Imported, OJ1212_A08.14Imported, OJ1263H11.10Imported, OJ1280_A04.1Imported, OJ1387_F08.9Imported, OJ1525_A02.10Imported, OJ1717_A09.1Imported, OsJ_03994Imported, OsJ_07955Imported, OsJ_09199Imported, OsJ_15915Imported, OsJ_18829Imported, OsJ_24666Imported, OsJ_29473Imported, OsJ_30268Imported, OsJ_32304Imported, OSJNBa0009E21.13Imported, OSJNBa0025B05.1Imported, OSJNBa0088A01.17Imported, OSNPB_010835900Imported, OSNPB_020684500Imported, OSNPB_030119900Imported, OSNPB_040583600Imported, OSNPB_050462700Imported, OSNPB_050466600Imported, OSNPB_070549900Imported, OSNPB_090433600Imported, OSNPB_090553100Imported, OSNPB_100539500Imported, P0506B12.23Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componentsi: Chromosome 1, Chromosome 10, Chromosome 2, Chromosome 3, Chromosome 4, Chromosome 5, Chromosome 7, Chromosome 9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chromosome, Nucleosome coreUniRule annotationSAAS annotation, NucleusUniRule annotationSAAS annotation

Expressioni

Gene expression databases

ExpressionAtlasiQ7XUC9 differential

Interactioni

Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.UniRule annotationSAAS annotation

GO - Molecular functioni

Protein-protein interaction databases

STRINGi39947.LOC_Os10g39410.1

Structurei

3D structure databases

SMRiQ7XUC9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 96CENP-T_CInterPro annotationAdd BLAST62

Sequence similaritiesi

Belongs to the histone H4 family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3467 Eukaryota
COG2036 LUCA
KOiK11254
OMAiHINGITK
OrthoDBiEOG09360XKI

Family and domain databases

CDDicd00076 H4, 1 hit
Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR035425 CENP-T/H4_C
IPR009072 Histone-fold
IPR001951 Histone_H4
IPR019809 Histone_H4_CS
PfamiView protein in Pfam
PF15511 CENP-T_C, 1 hit
PRINTSiPR00623 HISTONEH4
SMARTiView protein in SMART
SM00417 H4, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS00047 HISTONE_H4, 1 hit

Sequencei

Sequence statusi: Complete.

Q7XUC9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL
60 70 80 90 100
IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG

FGG
Length:103
Mass (Da):11,409
Last modified:March 1, 2004 - v2
Checksum:iA9FD57725A2A7598
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC073166 Genomic DNA Translation: AAG46106.1
AC096782 Genomic DNA Translation: AAM93740.1
AC118980 Genomic DNA Translation: AAO15293.1
DP000086 Genomic DNA Translation: AAP54838.1
AC108876 Genomic DNA Translation: AAT39190.1
AC108503 Genomic DNA Translation: AAT58763.1
AC121361 Genomic DNA Translation: AAT58785.1
AC108500 Genomic DNA Translation: AAU90170.1
DP000009 Genomic DNA Translation: ABF93682.1
AP003271 Genomic DNA Translation: BAB89744.1
AP004401 Genomic DNA Translation: BAC57734.1
AP004071 Genomic DNA Translation: BAD07563.1
AP004255 Genomic DNA Translation: BAD27874.1
AP005551 Genomic DNA Translation: BAD33556.1
AP008207 Genomic DNA Translation: BAF06643.2
AP008208 Genomic DNA Translation: BAF09676.1
AP008209 Genomic DNA Translation: BAF10697.1
AP008210 Genomic DNA Translation: BAF15578.1
AP008211 Genomic DNA Translation: BAF17683.1
AP008211 Genomic DNA Translation: BAF17700.1
AP008215 Genomic DNA Translation: BAF25159.1
AP008215 Genomic DNA Translation: BAF25792.1
AP008216 Genomic DNA Translation: BAF27093.1
AK058686 mRNA Translation: BAG86775.1
AK058741 mRNA Translation: BAG86791.1
AK059019 mRNA Translation: BAG86871.1
AK059098 mRNA Translation: BAG86892.1
AK105816 mRNA Translation: BAG97383.1
AK119240 mRNA Translation: BAG99598.1
AK119699 mRNA Translation: BAG99753.1
AP008213 Genomic DNA Translation: BAH93978.1
AP014957 Genomic DNA Translation: BAS75107.1
AP014958 Genomic DNA Translation: BAS80323.1
AP014959 Genomic DNA Translation: BAS82016.1
AP014960 Genomic DNA Translation: BAS90673.1
AP014961 Genomic DNA Translation: BAS94424.1
AP014961 Genomic DNA Translation: BAS94452.1
AP014963 Genomic DNA Translation: BAT02038.1
AP014965 Genomic DNA Translation: BAT08228.1
AP014965 Genomic DNA Translation: BAT09322.1
AP014966 Genomic DNA Translation: BAT11849.1
AL662987 Genomic DNA Translation: CAD41377.2
CM000138 Genomic DNA Translation: EAZ14069.1
CM000147 Genomic DNA Translation: EAZ16833.1
CM000139 Genomic DNA Translation: EAZ24208.1
CM000140 Genomic DNA Translation: EAZ25381.1
CM000141 Genomic DNA Translation: EAZ31763.1
CM000144 Genomic DNA Translation: EAZ40221.1
CM000146 Genomic DNA Translation: EAZ45602.1
CM000142 Genomic DNA Translation: EEE64000.1
CM000146 Genomic DNA Translation: EEE69764.1
RefSeqiXP_015610672.1, XM_015755186.1
XP_015612705.1, XM_015757219.1
XP_015612982.1, XM_015757496.1
XP_015614455.1, XM_015758969.1
XP_015627403.1, XM_015771917.1
XP_015628561.1, XM_015773075.1
XP_015636819.1, XM_015781333.1
XP_015637997.1, XM_015782511.1
XP_015639309.1, XM_015783823.1
XP_015645242.1, XM_015789756.1
UniGeneiOs.57674
Os.57861
Os.70011
Os.80270
Os.80803
Os.80871

Genome annotation databases

EnsemblPlantsiOs01t0835900-00; Os01t0835900-00; Os01g0835900
Os02t0684500-00; Os02t0684500-00; Os02g0684500
Os03t0119900-01; Os03t0119900-01; Os03g0119900
Os04t0583600-01; Os04t0583600-01; Os04g0583600
Os05t0462700-01; Os05t0462700-01; Os05g0462700
Os05t0466600-01; Os05t0466600-01; Os05g0466600
Os07t0549900-00; Os07t0549900-00; Os07g0549900
Os09t0433600-01; Os09t0433600-01; Os09g0433600
Os09t0553100-00; Os09t0553100-00; Os09g0553100
Os10t0539500-01; Os10t0539500-01; Os10g0539500
GeneIDi4327457
4330345
4331427
4336777
4339029
4339049
4347135
4347799
4349248
9270544
GrameneiOs01t0835900-00; Os01t0835900-00; Os01g0835900
Os02t0684500-00; Os02t0684500-00; Os02g0684500
Os03t0119900-01; Os03t0119900-01; Os03g0119900
Os04t0583600-01; Os04t0583600-01; Os04g0583600
Os05t0462700-01; Os05t0462700-01; Os05g0462700
Os05t0466600-01; Os05t0466600-01; Os05g0466600
Os07t0549900-00; Os07t0549900-00; Os07g0549900
Os09t0433600-01; Os09t0433600-01; Os09g0433600
Os09t0553100-00; Os09t0553100-00; Os09g0553100
Os10t0539500-01; Os10t0539500-01; Os10g0539500
KEGGiosa:4327457
osa:4330345
osa:4331427
osa:4336777
osa:4339029
osa:4339049
osa:4347135
osa:4347799
osa:4349248
osa:9270544

Similar proteinsi

Entry informationi

Entry nameiQ7XUC9_ORYSJ
AccessioniPrimary (citable) accession number: Q7XUC9
Secondary accession number(s): Q0JHY5, Q7G823
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: March 1, 2004
Last modified: May 23, 2018
This is version 150 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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