Q7XUC9 (Q7XUC9_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Histone H4 RuleBase RU000528

Gene names

Name:	OSJNBa0088A01.17 EMBL CAD41377.2
Synonyms:	OJ1081_G10.11 EMBL BAD33556.1, OJ1212_A08.14 EMBL BAD27874.1, OJ1263H11.10 EMBL AAO15293.1, OJ1280_A04.1 EMBL AAU90170.1, OJ1387_F08.9 EMBL AAT58763.1, OJ1525_A02.10 EMBL AAT39190.1, OJ1717_A09.1 EMBL BAD07563.1, Os03g0119900 EMBL BAF10697.1, Os09g0433600 EMBL BAF25159.1, Os09g0553100 EMBL BAF25792.1, Os10g0539500 EMBL BAF27093.1, OSJNBa0009E21.13 EMBL AAT58785.1, OSJNBa0025B05.1 EMBL AAM93740.1, OSJNBb0064P21.1 EMBL AAG46106.1, P0506B12.23 EMBL BAB89744.1, P0534A03.129 EMBL BAC57734.1
Ordered Locus Names:	LOC_Os03g02780 EMBL ABF93682.1, LOC_Os10g39410 EMBL AAP54838.1, Os01g0835900 EMBL BAF06643.2, Os02g0684500 EMBL BAF09676.1, Os04g0583600 EMBL BAF15578.1, Os05g0462700 EMBL BAF17683.1, Os05g0466600 EMBL BAF17700.1, Os07g0549900 EMBL BAH93978.1
ORF Names:	OsJ_03994 EMBL EAZ14069.1, OsJ_07955 EMBL EAZ24208.1, OsJ_09199 EMBL EAZ25381.1, OsJ_15915 EMBL EAZ31763.1, OsJ_18829 EMBL EEE64000.1, OsJ_24666 EMBL EAZ40221.1, OsJ_29473 EMBL EEE69764.1, OsJ_30268 EMBL EAZ45602.1, OsJ_32304 EMBL EAZ16833.1

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	103 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling By similarity. SAAS SAAS001951 RuleBase RU000528
Subunit structure	The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity. RuleBase RU000528
Sequence similarities	Belongs to the histone H4 family. RuleBase RU000528

Ontologies

Keywords
Cellular component	Chromosome Nucleosome core SAAS SAAS001951 RuleBase RU000528 Nucleus SAAS SAAS001951 RuleBase RU000528
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	nucleosome assembly Inferred from electronic annotation. Source: InterPro response to water deprivation Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	chloroplast Inferred from electronic annotation. Source: EnsemblPlants/Gramene nucleolus Inferred from electronic annotation. Source: EnsemblPlants/Gramene nucleosome Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene vacuole Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7XUC9 [UniParc]. Last modified March 1, 2004. Version 2. Checksum: A9FD57725A2A7598	FASTA	103	11,409
	10 20 30 40 50 60 MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK 70 80 90 100 IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG FGG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence." Buell C.R., Yuan Q., Moffat K.S., Hill J.N., Burr P.C., Hsiao J., Zismann V., Pai G., Bowman C.L., Fujii C.Y., VanAken S.E., Bowman C.L., Craven B., Utterback T.R., Khalak H., Feldblyum T.V., Quackenbush J., White O., Salzberg S.L., Fraser C.M. Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1717_A09." Sasaki T., Matsumoto T., Yamamoto K. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	Buell R. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Oryza sativa chromosome 10 BAC OSJNBa0025B05 genomic sequence." Buell C.R., Yuan Q., Ouyang S., Liu J., Gansberger K., Kim M.M., Overton II L.L., Bera J.J., Tsitrin T., Krol M.I., Jarrahi B.B., Jin S.S., Koo H., Zismann V., Hsiao J., Blunt S., Vanaken S.S., Utterback T.T. , Feldblyum T.V., Yang Q.Q., Haas B.J., Suh B.B., Peterson J.J., Quackenbush J., White O., Salzberg S.L., Fraser C.M. Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1212_A08." Sasaki T., Matsumoto T., Yamamoto K. Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, PAC clone:P0534A03." Sasaki T., Matsumoto T., Yamamoto K. Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[8]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B. Nature 420:316-320(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[9]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC clone:OJ1081_G10." Sasaki T., Matsumoto T., Hattori M., Sakaki Y., Katayose Y. Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[10]	Buell R. Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[11]	"In-depth view of structure, activity, and evolution of rice chromosome 10." Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H. , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A. Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[12]	"Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice." Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K. , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y. Science 301:376-379(2003) Cited for: NUCLEOTIDE SEQUENCE.
[13]	"Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice." Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I. , Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., Murakami K., Murata M., Nagata T., Nakahama Y., Nakamura M., Namiki T., Narikawa R., Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., Yazaki J., Yokomizo S., Yoshimura A. Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[14]	"Rice Genomic Sequence." Wing R.A., Yu Y., Soderlund C., Kim H.-R., Rambo T., Currie J., Collura K., McCombie D.W.R., de la Bastide M., Spiegel L., Preston R., Kirchoff K., Kuit K., Nascimento L., Zutavern T., Balija V., Bell M., Baker J. , Santos L., Miller B., Katzenberger F., Muller S., King L., Yang C., O'Shaugnessy A., Palmer L., Dedhia N. Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[15]	Buell C.R., Wing R.A., McCombie W.R., Messing J., Yuan Q., Ouyang S. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[16]	"Oryza sativa BAC OJ1387_F08 genomic sequence." Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[17]	"Oryza sativa BAC OJ1525_A02 genomic sequence." Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[18]	"Oryza sativa BAC OSJNBa0009E21 genomic sequence." Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[19]	"Oryza sativa BAC OJ1280_A04 genomic sequence." Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F. Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[20]	"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species." The rice chromosome 3 sequencing consortium Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S. Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[21]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[22]	"The map-based sequence of the rice genome." International Rice Genome Sequencing Project Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N. , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T. Nature 436:793-800(2005) Cited for: NUCLEOTIDE SEQUENCE.
[23]	"The Genomes of Oryza sativa: A History of Duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H. PLoS Biol. 3:E38-E38(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[24]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 1." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[25]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 10." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[26]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[27]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 3." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[28]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 4." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[29]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 5." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[30]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[31]	"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9." IRGSP(International Rice Genome Sequencing Project) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[32]	"The Second Rice Annotation Project Meeting (RAP2)." The Rice Annotation Project (RAP) Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[33]	"The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information." Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T. Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[34]	Buell R., Wing R.A., McCombie W.A., Ouyang S. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[35]	Buell R. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[36]	"Improved gene annotation of the rice (Oryza sativa) genomes." Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S. Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[37]	"Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana." The Rice Annotation Project (RAP) Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E. , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T. Genome Res. 17:175-183(2007) Cited for: NUCLEOTIDE SEQUENCE.
[38]	"The Rice Annotation Project Database (RAP-DB): 2008 update." The Rice Annotation Project (RAP) Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H. , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M. Nucleic Acids Res. 36:D1028-D1033(2008) Cited for: NUCLEOTIDE SEQUENCE.
[39]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[40]	"Improved gene annotation of the rice (Oryza sativa) genomes." Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[41]	Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC073166 Genomic DNA. Translation: AAG46106.1. AC096782 Genomic DNA. Translation: AAM93740.1. AC118980 Genomic DNA. Translation: AAO15293.1. DP000086 Genomic DNA. Translation: AAP54838.1. AC108876 Genomic DNA. Translation: AAT39190.1. AC108503 Genomic DNA. Translation: AAT58763.1. AC121361 Genomic DNA. Translation: AAT58785.1. AC108500 Genomic DNA. Translation: AAU90170.1. DP000009 Genomic DNA. Translation: ABF93682.1. AP003271 Genomic DNA. Translation: BAB89744.1. AP004401 Genomic DNA. Translation: BAC57734.1. AP004071 Genomic DNA. Translation: BAD07563.1. AP004255 Genomic DNA. Translation: BAD27874.1. AP005551 Genomic DNA. Translation: BAD33556.1. AP008207 Genomic DNA. Translation: BAF06643.2. AP008208 Genomic DNA. Translation: BAF09676.1. AP008209 Genomic DNA. Translation: BAF10697.1. AP008210 Genomic DNA. Translation: BAF15578.1. AP008211 Genomic DNA. Translation: BAF17683.1. AP008211 Genomic DNA. Translation: BAF17700.1. AP008215 Genomic DNA. Translation: BAF25159.1. AP008215 Genomic DNA. Translation: BAF25792.1. AP008216 Genomic DNA. Translation: BAF27093.1. AK058686 mRNA. Translation: BAG86775.1. AK058741 mRNA. Translation: BAG86791.1. AK059019 mRNA. Translation: BAG86871.1. AK059098 mRNA. Translation: BAG86892.1. AK105816 mRNA. Translation: BAG97383.1. AK119240 mRNA. Translation: BAG99598.1. AK119699 mRNA. Translation: BAG99753.1. AP008213 Genomic DNA. Translation: BAH93978.1. AL662987 Genomic DNA. Translation: CAD41377.2. CM000138 Genomic DNA. Translation: EAZ14069.1. CM000147 Genomic DNA. Translation: EAZ16833.1. CM000139 Genomic DNA. Translation: EAZ24208.1. CM000140 Genomic DNA. Translation: EAZ25381.1. CM000141 Genomic DNA. Translation: EAZ31763.1. CM000144 Genomic DNA. Translation: EAZ40221.1. CM000146 Genomic DNA. Translation: EAZ45602.1. CM000142 Genomic DNA. Translation: EEE64000.1. CM000146 Genomic DNA. Translation: EEE69764.1.
RefSeq	NP_001044729.2. NM_001051264.2. NP_001047762.1. NM_001054297.2. NP_001048783.1. NM_001055318.1. NP_001053664.1. NM_001060199.1. NP_001055769.1. NM_001062304.1. NP_001055786.1. NM_001062321.1. NP_001063245.1. NM_001069780.1. NP_001063878.1. NM_001070413.2. NP_001065179.1. NM_001071714.1. NP_001175250.1. NM_001188321.1.
UniGene	Os.12348. Os.57674. Os.57861. Os.70011. Os.78955. Os.79219. Os.79965. Os.80270. Os.80803. Os.80871.
3D structure databases
HSSP	HSSP built from PDB template 1ID3 based on UniProtKB P02309.
SMR	Q7XUC9. Positions 9-103.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os02g45940.1; LOC_Os02g45940.1; LOC_Os02g45940. LOC_Os03g02780.1; LOC_Os03g02780.1; LOC_Os03g02780. LOC_Os04g49420.1; LOC_Os04g49420.1; LOC_Os04g49420. LOC_Os05g38740.1; LOC_Os05g38740.1; LOC_Os05g38740. LOC_Os05g39050.1; LOC_Os05g39050.1; LOC_Os05g39050. LOC_Os07g36500.1; LOC_Os07g36500.1; LOC_Os07g36500. LOC_Os09g26340.1; LOC_Os09g26340.1; LOC_Os09g26340. LOC_Os09g38020.1; LOC_Os09g38020.1; LOC_Os09g38020. LOC_Os10g39410.1; LOC_Os10g39410.1; LOC_Os10g39410.
GeneID	4327457. 4330345. 4331427. 4336777. 4339029. 4339049. 4347135. 4347799. 4349248. 9270544.
KEGG	osa:4327457. osa:4330345. osa:4331427. osa:4336777. osa:4339029. osa:4339049. osa:4347135. osa:4347799. osa:4349248. osa:9270544.
Phylogenomic databases
KO	K11254.
OMA	TAMDIVY.
ProtClustDB	PLN00035.
Gene expression databases
Genevestigator	Q7G823.
Family and domain databases
Gene3D	1.10.20.10. 1 hit.
InterPro	IPR009072. Histone-fold. IPR007125. Histone_core_D. IPR001951. Histone_H4. IPR019809. Histone_H4_CS. [Graphical view]
PANTHER	PTHR10484. PTHR10484. 1 hit.
Pfam	PF00125. Histone. 1 hit. [Graphical view]
PRINTS	PR00623. HISTONEH4.
SMART	SM00417. H4. 1 hit. [Graphical view]
SUPFAM	SSF47113. Histone-fold. 1 hit.
PROSITE	PS00047. HISTONE_H4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7XUC9_ORYSJ

Accession

Primary (citable) accession number: Q7XUC9
Secondary accession number(s): Q0JHY5, Q7G823

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	March 1, 2004
Last modified:	May 1, 2013
This is version 99 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)