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Q7XUC9

- Q7XUC9_ORYSJ

UniProt

Q7XUC9 - Q7XUC9_ORYSJ

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Protein

Histone H4

Gene

OSJNBa0088A01.17

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW

GO - Biological processi

  1. nucleosome assembly Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Histone H4UniRule annotation
Gene namesi
Name:OSJNBa0088A01.17Imported
Synonyms:OJ1081_G10.11Imported, OJ1212_A08.14Imported, OJ1263H11.10Imported, OJ1280_A04.1Imported, OJ1387_F08.9Imported, OJ1525_A02.10Imported, OJ1717_A09.1Imported, Os03g0119900Imported, Os09g0433600Imported, Os09g0553100Imported, Os10g0539500Imported, OSJNBa0009E21.13Imported, OSJNBa0025B05.1Imported, OSJNBb0064P21.1Imported, P0506B12.23Imported, P0534A03.129Imported
Ordered Locus Names:LOC_Os03g02780Imported, LOC_Os10g39410Imported, Os01g0835900Imported, Os02g0684500Imported, Os04g0583600Imported, Os05g0462700Imported, Os05g0466600Imported, Os07g0549900Imported
ORF Names:OsJ_03994Imported, OsJ_07955Imported, OsJ_09199Imported, OsJ_15915Imported, OsJ_18829Imported, OsJ_24666Imported, OsJ_29473Imported, OsJ_30268Imported, OsJ_32304Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1, UP000000763: Chromosome 10, UP000000763: Chromosome 2, UP000000763: Chromosome 3, UP000000763: Chromosome 4, UP000000763: Chromosome 5, UP000000763: Chromosome 7, UP000000763: Chromosome 9

Subcellular locationi

Nucleus SAAS annotation. Chromosome SAAS annotation

GO - Cellular componenti

  1. chloroplast Source: EnsemblPlants/Gramene
  2. cytosol Source: EnsemblPlants/Gramene
  3. nucleolus Source: EnsemblPlants/Gramene
  4. nucleosome Source: UniProtKB-KW
  5. plasma membrane Source: EnsemblPlants/Gramene
  6. plasmodesma Source: EnsemblPlants/Gramene
  7. thylakoid Source: EnsemblPlants/Gramene
  8. vacuolar membrane Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

Chromosome, Nucleosome coreUniRule annotationSAAS annotation, NucleusUniRule annotationSAAS annotation

Expressioni

Gene expression databases

ExpressionAtlasiQ7XUC9. baseline and differential.
GenevestigatoriQ7G823.

Interactioni

Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ7XUC9.
SMRiQ7XUC9. Positions 9-103.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the histone H4 family.UniRule annotation

Phylogenomic databases

InParanoidiQ7XUC9.
KOiK11254.
OMAiYEEVRVV.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR001951. Histone_H4.
IPR019809. Histone_H4_CS.
[Graphical view]
PfamiPF00125. Histone. 1 hit.
[Graphical view]
PRINTSiPR00623. HISTONEH4.
SMARTiSM00417. H4. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS00047. HISTONE_H4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7XUC9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL
60 70 80 90 100
IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG

FGG
Length:103
Mass (Da):11,409
Last modified:March 1, 2004 - v2
Checksum:iA9FD57725A2A7598
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC073166 Genomic DNA. Translation: AAG46106.1.
AC096782 Genomic DNA. Translation: AAM93740.1.
AC118980 Genomic DNA. Translation: AAO15293.1.
DP000086 Genomic DNA. Translation: AAP54838.1.
AC108876 Genomic DNA. Translation: AAT39190.1.
AC108503 Genomic DNA. Translation: AAT58763.1.
AC121361 Genomic DNA. Translation: AAT58785.1.
AC108500 Genomic DNA. Translation: AAU90170.1.
DP000009 Genomic DNA. Translation: ABF93682.1.
AP003271 Genomic DNA. Translation: BAB89744.1.
AP004401 Genomic DNA. Translation: BAC57734.1.
AP004071 Genomic DNA. Translation: BAD07563.1.
AP004255 Genomic DNA. Translation: BAD27874.1.
AP005551 Genomic DNA. Translation: BAD33556.1.
AP008207 Genomic DNA. Translation: BAF06643.2.
AP008208 Genomic DNA. Translation: BAF09676.1.
AP008209 Genomic DNA. Translation: BAF10697.1.
AP008210 Genomic DNA. Translation: BAF15578.1.
AP008211 Genomic DNA. Translation: BAF17683.1.
AP008211 Genomic DNA. Translation: BAF17700.1.
AP008215 Genomic DNA. Translation: BAF25159.1.
AP008215 Genomic DNA. Translation: BAF25792.1.
AP008216 Genomic DNA. Translation: BAF27093.1.
AK058686 mRNA. Translation: BAG86775.1.
AK058741 mRNA. Translation: BAG86791.1.
AK059019 mRNA. Translation: BAG86871.1.
AK059098 mRNA. Translation: BAG86892.1.
AK105816 mRNA. Translation: BAG97383.1.
AK119240 mRNA. Translation: BAG99598.1.
AK119699 mRNA. Translation: BAG99753.1.
AP008213 Genomic DNA. Translation: BAH93978.1.
AL662987 Genomic DNA. Translation: CAD41377.2.
CM000138 Genomic DNA. Translation: EAZ14069.1.
CM000147 Genomic DNA. Translation: EAZ16833.1.
CM000139 Genomic DNA. Translation: EAZ24208.1.
CM000140 Genomic DNA. Translation: EAZ25381.1.
CM000141 Genomic DNA. Translation: EAZ31763.1.
CM000144 Genomic DNA. Translation: EAZ40221.1.
CM000146 Genomic DNA. Translation: EAZ45602.1.
CM000142 Genomic DNA. Translation: EEE64000.1.
CM000146 Genomic DNA. Translation: EEE69764.1.
RefSeqiNP_001044729.2. NM_001051264.2.
NP_001047762.1. NM_001054297.2.
NP_001048783.1. NM_001055318.1.
NP_001053664.1. NM_001060199.1.
NP_001055769.1. NM_001062304.1.
NP_001055786.1. NM_001062321.1.
NP_001063245.1. NM_001069780.1.
NP_001063878.1. NM_001070413.2.
NP_001065179.1. NM_001071714.1.
NP_001175250.1. NM_001188321.1.
UniGeneiOs.12348.
Os.57674.
Os.57861.
Os.70011.
Os.78955.
Os.79219.
Os.79965.
Os.80270.
Os.80803.
Os.80871.

Genome annotation databases

EnsemblPlantsiOS01T0835900-00; OS01T0835900-00; OS01G0835900.
OS02T0684500-00; OS02T0684500-00; OS02G0684500.
OS03T0119900-01; OS03T0119900-01; OS03G0119900.
OS04T0583600-01; OS04T0583600-01; OS04G0583600.
OS05T0462700-01; OS05T0462700-01; OS05G0462700.
OS05T0466600-01; OS05T0466600-01; OS05G0466600.
OS07T0549900-00; OS07T0549900-00; OS07G0549900.
OS09T0433600-01; OS09T0433600-01; OS09G0433600.
OS09T0553100-00; OS09T0553100-00; OS09G0553100.
OS10T0539500-01; OS10T0539500-01; OS10G0539500.
GeneIDi4327457.
4330345.
4331427.
4336777.
4339029.
4339049.
4347135.
4347799.
4349248.
9270544.
KEGGiosa:4327457.
osa:4330345.
osa:4331427.
osa:4336777.
osa:4339029.
osa:4339049.
osa:4347135.
osa:4347799.
osa:4349248.
osa:9270544.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC073166 Genomic DNA. Translation: AAG46106.1 .
AC096782 Genomic DNA. Translation: AAM93740.1 .
AC118980 Genomic DNA. Translation: AAO15293.1 .
DP000086 Genomic DNA. Translation: AAP54838.1 .
AC108876 Genomic DNA. Translation: AAT39190.1 .
AC108503 Genomic DNA. Translation: AAT58763.1 .
AC121361 Genomic DNA. Translation: AAT58785.1 .
AC108500 Genomic DNA. Translation: AAU90170.1 .
DP000009 Genomic DNA. Translation: ABF93682.1 .
AP003271 Genomic DNA. Translation: BAB89744.1 .
AP004401 Genomic DNA. Translation: BAC57734.1 .
AP004071 Genomic DNA. Translation: BAD07563.1 .
AP004255 Genomic DNA. Translation: BAD27874.1 .
AP005551 Genomic DNA. Translation: BAD33556.1 .
AP008207 Genomic DNA. Translation: BAF06643.2 .
AP008208 Genomic DNA. Translation: BAF09676.1 .
AP008209 Genomic DNA. Translation: BAF10697.1 .
AP008210 Genomic DNA. Translation: BAF15578.1 .
AP008211 Genomic DNA. Translation: BAF17683.1 .
AP008211 Genomic DNA. Translation: BAF17700.1 .
AP008215 Genomic DNA. Translation: BAF25159.1 .
AP008215 Genomic DNA. Translation: BAF25792.1 .
AP008216 Genomic DNA. Translation: BAF27093.1 .
AK058686 mRNA. Translation: BAG86775.1 .
AK058741 mRNA. Translation: BAG86791.1 .
AK059019 mRNA. Translation: BAG86871.1 .
AK059098 mRNA. Translation: BAG86892.1 .
AK105816 mRNA. Translation: BAG97383.1 .
AK119240 mRNA. Translation: BAG99598.1 .
AK119699 mRNA. Translation: BAG99753.1 .
AP008213 Genomic DNA. Translation: BAH93978.1 .
AL662987 Genomic DNA. Translation: CAD41377.2 .
CM000138 Genomic DNA. Translation: EAZ14069.1 .
CM000147 Genomic DNA. Translation: EAZ16833.1 .
CM000139 Genomic DNA. Translation: EAZ24208.1 .
CM000140 Genomic DNA. Translation: EAZ25381.1 .
CM000141 Genomic DNA. Translation: EAZ31763.1 .
CM000144 Genomic DNA. Translation: EAZ40221.1 .
CM000146 Genomic DNA. Translation: EAZ45602.1 .
CM000142 Genomic DNA. Translation: EEE64000.1 .
CM000146 Genomic DNA. Translation: EEE69764.1 .
RefSeqi NP_001044729.2. NM_001051264.2.
NP_001047762.1. NM_001054297.2.
NP_001048783.1. NM_001055318.1.
NP_001053664.1. NM_001060199.1.
NP_001055769.1. NM_001062304.1.
NP_001055786.1. NM_001062321.1.
NP_001063245.1. NM_001069780.1.
NP_001063878.1. NM_001070413.2.
NP_001065179.1. NM_001071714.1.
NP_001175250.1. NM_001188321.1.
UniGenei Os.12348.
Os.57674.
Os.57861.
Os.70011.
Os.78955.
Os.79219.
Os.79965.
Os.80270.
Os.80803.
Os.80871.

3D structure databases

ProteinModelPortali Q7XUC9.
SMRi Q7XUC9. Positions 9-103.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS01T0835900-00 ; OS01T0835900-00 ; OS01G0835900 .
OS02T0684500-00 ; OS02T0684500-00 ; OS02G0684500 .
OS03T0119900-01 ; OS03T0119900-01 ; OS03G0119900 .
OS04T0583600-01 ; OS04T0583600-01 ; OS04G0583600 .
OS05T0462700-01 ; OS05T0462700-01 ; OS05G0462700 .
OS05T0466600-01 ; OS05T0466600-01 ; OS05G0466600 .
OS07T0549900-00 ; OS07T0549900-00 ; OS07G0549900 .
OS09T0433600-01 ; OS09T0433600-01 ; OS09G0433600 .
OS09T0553100-00 ; OS09T0553100-00 ; OS09G0553100 .
OS10T0539500-01 ; OS10T0539500-01 ; OS10G0539500 .
GeneIDi 4327457.
4330345.
4331427.
4336777.
4339029.
4339049.
4347135.
4347799.
4349248.
9270544.
KEGGi osa:4327457.
osa:4330345.
osa:4331427.
osa:4336777.
osa:4339029.
osa:4339049.
osa:4347135.
osa:4347799.
osa:4349248.
osa:9270544.

Phylogenomic databases

InParanoidi Q7XUC9.
KOi K11254.
OMAi YEEVRVV.

Gene expression databases

ExpressionAtlasi Q7XUC9. baseline and differential.
Genevestigatori Q7G823.

Family and domain databases

Gene3Di 1.10.20.10. 1 hit.
InterProi IPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR001951. Histone_H4.
IPR019809. Histone_H4_CS.
[Graphical view ]
Pfami PF00125. Histone. 1 hit.
[Graphical view ]
PRINTSi PR00623. HISTONEH4.
SMARTi SM00417. H4. 1 hit.
[Graphical view ]
SUPFAMi SSF47113. SSF47113. 1 hit.
PROSITEi PS00047. HISTONE_H4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence."
    Buell C.R., Yuan Q., Moffat K.S., Hill J.N., Burr P.C., Hsiao J., Zismann V., Pai G., Bowman C.L., Fujii C.Y., VanAken S.E., Bowman C.L., Craven B., Utterback T.R., Khalak H., Feldblyum T.V., Quackenbush J., White O., Salzberg S.L., Fraser C.M.
    Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1717_A09."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Buell R.
    Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1212_A08."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, PAC clone:P0534A03."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  8. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  9. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC clone:OJ1081_G10."
    Sasaki T., Matsumoto T., Hattori M., Sakaki Y., Katayose Y.
    Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. Buell R.
    Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  11. "In-depth view of structure, activity, and evolution of rice chromosome 10."
    Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.
    , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
    Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  12. "Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
    Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K.
    , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
    Science 301:376-379(2003)
    Cited for: NUCLEOTIDE SEQUENCE.
  13. "Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice."
    Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I.
    , Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., Murakami K., Murata M., Nagata T., Nakahama Y., Nakamura M., Namiki T., Narikawa R., Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., Yazaki J., Yokomizo S., Yoshimura A.
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  14. Cited for: NUCLEOTIDE SEQUENCE.
  15. Buell C.R., Wing R.A., McCombie W.R., Messing J., Yuan Q., Ouyang S.
    Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  16. Cited for: NUCLEOTIDE SEQUENCE.
  17. Cited for: NUCLEOTIDE SEQUENCE.
  18. Cited for: NUCLEOTIDE SEQUENCE.
  19. Cited for: NUCLEOTIDE SEQUENCE.
  20. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  21. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  22. "The map-based sequence of the rice genome."
    International Rice Genome Sequencing Project
    Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.
    , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
    Nature 436:793-800(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
  23. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  24. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 1."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  25. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 10."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  26. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  27. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 3."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  28. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 4."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  29. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 5."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  30. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  31. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  32. "The Second Rice Annotation Project Meeting (RAP2)."
    The Rice Annotation Project (RAP)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  33. "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
    Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
    Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  34. Buell R., Wing R.A., McCombie W.A., Ouyang S.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  35. Buell R.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  36. "Improved gene annotation of the rice (Oryza sativa) genomes."
    Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  37. "Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
    The Rice Annotation Project (RAP)
    Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E.
    , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
    Genome Res. 17:175-183(2007)
    Cited for: NUCLEOTIDE SEQUENCE.
  38. "The Rice Annotation Project Database (RAP-DB): 2008 update."
    The Rice Annotation Project (RAP)
    Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.
    , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
    Nucleic Acids Res. 36:D1028-D1033(2008)
    Cited for: NUCLEOTIDE SEQUENCE.
  39. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. NipponbareImported.
  40. "Improved gene annotation of the rice (Oryza sativa) genomes."
    Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
    Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  41. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ7XUC9_ORYSJ
AccessioniPrimary (citable) accession number: Q7XUC9
Secondary accession number(s): Q0JHY5, Q7G823
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: March 1, 2004
Last modified: October 29, 2014
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3