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Q7XUC9 (Q7XUC9_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 111. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone H4 RuleBase RU000528
Gene names
Name:OSJNBa0088A01.17 EMBL CAD41377.2
Synonyms:OJ1081_G10.11 EMBL BAD33556.1, OJ1212_A08.14 EMBL BAD27874.1, OJ1263H11.10 EMBL AAO15293.1, OJ1280_A04.1 EMBL AAU90170.1, OJ1387_F08.9 EMBL AAT58763.1, OJ1525_A02.10 EMBL AAT39190.1, OJ1717_A09.1 EMBL BAD07563.1, Os03g0119900 EMBL BAF10697.1, Os09g0433600 EMBL BAF25159.1, Os09g0553100 EMBL BAF25792.1, Os10g0539500 EMBL BAF27093.1, OSJNBa0009E21.13 EMBL AAT58785.1, OSJNBa0025B05.1 EMBL AAM93740.1, OSJNBb0064P21.1 EMBL AAG46106.1, P0506B12.23 EMBL BAB89744.1, P0534A03.129 EMBL BAC57734.1
Ordered Locus Names:LOC_Os03g02780 EMBL ABF93682.1, LOC_Os10g39410 EMBL AAP54838.1, Os01g0835900 EMBL BAF06643.2, Os02g0684500 EMBL BAF09676.1, Os04g0583600 EMBL BAF15578.1, Os05g0462700 EMBL BAF17683.1, Os05g0466600 EMBL BAF17700.1, Os07g0549900 EMBL BAH93978.1
ORF Names:OsJ_03994 EMBL EAZ14069.1, OsJ_07955 EMBL EAZ24208.1, OsJ_09199 EMBL EAZ25381.1, OsJ_15915 EMBL EAZ31763.1, OsJ_18829 EMBL EEE64000.1, OsJ_24666 EMBL EAZ40221.1, OsJ_29473 EMBL EEE69764.1, OsJ_30268 EMBL EAZ45602.1, OsJ_32304 EMBL EAZ16833.1
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length103 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling By similarity. SAAS SAAS001951 RuleBase RU000528

Subunit structure

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity. RuleBase RU000528

Subcellular location

Nucleus. Chromosome By similarity SAAS SAAS001951.

Sequence similarities

Belongs to the histone H4 family. RuleBase RU000528

Ontologies

Keywords
   Cellular componentChromosome
Nucleosome core SAAS SAAS001951 RuleBase RU000528
Nucleus SAAS SAAS001951 RuleBase RU000528
   LigandDNA-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processnucleosome assembly

Inferred from electronic annotation. Source: InterPro

response to water deprivation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cytosol

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

nucleolus

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

nucleosome

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

plasmodesma

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

thylakoid

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

vacuolar membrane

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q7XUC9 [UniParc].

Last modified March 1, 2004. Version 2.
Checksum: A9FD57725A2A7598

FASTA10311,409
        10         20         30         40         50         60 
MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK 

        70         80         90        100 
IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG FGG 

« Hide

References

« Hide 'large scale' references
[1]"Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence."
Buell C.R., Yuan Q., Moffat K.S., Hill J.N., Burr P.C., Hsiao J., Zismann V., Pai G., Bowman C.L., Fujii C.Y., VanAken S.E., Bowman C.L., Craven B., Utterback T.R., Khalak H., Feldblyum T.V., Quackenbush J., White O., Salzberg S.L., Fraser C.M.
Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1717_A09."
Sasaki T., Matsumoto T., Yamamoto K.
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Buell R.
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Oryza sativa chromosome 10 BAC OSJNBa0025B05 genomic sequence."
Buell C.R., Yuan Q., Ouyang S., Liu J., Gansberger K., Kim M.M., Overton II L.L., Bera J.J., Tsitrin T., Krol M.I., Jarrahi B.B., Jin S.S., Koo H., Zismann V., Hsiao J., Blunt S., Vanaken S.S., Utterback T.T. expand/collapse author list , Feldblyum T.V., Yang Q.Q., Haas B.J., Suh B.B., Peterson J.J., Quackenbush J., White O., Salzberg S.L., Fraser C.M.
Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC clone:OJ1212_A08."
Sasaki T., Matsumoto T., Yamamoto K.
Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, PAC clone:P0534A03."
Sasaki T., Matsumoto T., Yamamoto K.
Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The genome sequence and structure of rice chromosome 1."
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. expand/collapse author list , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[8]"Sequence and analysis of rice chromosome 4."
Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. expand/collapse author list , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B.
Nature 420:316-320(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[9]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC clone:OJ1081_G10."
Sasaki T., Matsumoto T., Hattori M., Sakaki Y., Katayose Y.
Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]Buell R.
Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]"In-depth view of structure, activity, and evolution of rice chromosome 10."
Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H. expand/collapse author list , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[12]"Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K. expand/collapse author list , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
Science 301:376-379(2003)
Cited for: NUCLEOTIDE SEQUENCE.
[13]"Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice."
Adachi J., Aizawa K., Akimura T., Arakawa T., Carninci P., Doi K., Fujimura T., Fukuda S., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayashizaki Y., Hayatsu N., Hiramoto K., Hiraoka T., Hori F., Hotta I. expand/collapse author list , Iida J., Iida Y., Ikeda R., Imamura K., Imotani K., Ishibiki J., Ishii Y., Ishikawa M., Itoh M., Kagawa I., Kanagawa S., Katoh H., Kawagashira N., Kawai J., Kawamata M., Kikuchi S., Kishikawa-Hirozane T., Kishimoto N., Kobayashi M., Kodama T., Kojima K., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Kurosaki T., Kusumegi T., Li C., Lu M., Masuda H., Matsubara K., Matsuyama T., Miura J., Miyazaki A., Mizuno K., Murakami K., Murata M., Nagata T., Nakahama Y., Nakamura M., Namiki T., Narikawa R., Niikura J., Nishi K., Nomura K., Numasaki R., Ohneda E., Ohno M., Ohtsuki K., Oka M., Ooka H., Osato N., Ota Y., Otomo Y., Ryu R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Sato K., Satoh K., Shibata K., Shinagawa A., Shiraki T., Shishiki T., Sogabe Y., Sugano S., Sugiyama A., Suzuki K., Suzuki Y., Tagami M., Tagami-Takeda Y., Tagawa A., Takahashi F., Takaku-Akahira S., Tanaka T., Tomaru A., Toya T., Tsunoda Y., Ueda M., Waki K., Xie Q., Yahagi W., Yamada H., Yamamoto M., Yasunishi A., Yazaki J., Yokomizo S., Yoshimura A.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[14]"Rice Genomic Sequence."
Wing R.A., Yu Y., Soderlund C., Kim H.-R., Rambo T., Currie J., Collura K., McCombie D.W.R., de la Bastide M., Spiegel L., Preston R., Kirchoff K., Kuit K., Nascimento L., Zutavern T., Balija V., Bell M., Baker J. expand/collapse author list , Santos L., Miller B., Katzenberger F., Muller S., King L., Yang C., O'Shaugnessy A., Palmer L., Dedhia N.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[15]Buell C.R., Wing R.A., McCombie W.R., Messing J., Yuan Q., Ouyang S.
Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[16]"Oryza sativa BAC OJ1387_F08 genomic sequence."
Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. expand/collapse author list , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F.
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[17]"Oryza sativa BAC OJ1525_A02 genomic sequence."
Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. expand/collapse author list , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F.
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[18]"Oryza sativa BAC OSJNBa0009E21 genomic sequence."
Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. expand/collapse author list , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F.
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[19]"Oryza sativa BAC OJ1280_A04 genomic sequence."
Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L., Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H., Huang J.-J. expand/collapse author list , Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W., Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F.
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[20]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[21]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[22]"The map-based sequence of the rice genome."
International Rice Genome Sequencing Project
Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N. expand/collapse author list , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
Nature 436:793-800(2005)
Cited for: NUCLEOTIDE SEQUENCE.
[23]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[24]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 1."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[25]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 10."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[26]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[27]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 3."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[28]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 4."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[29]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 5."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[30]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[31]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[32]"The Second Rice Annotation Project Meeting (RAP2)."
The Rice Annotation Project (RAP)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[33]"The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[34]Buell R., Wing R.A., McCombie W.A., Ouyang S.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[35]Buell R.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[36]"Improved gene annotation of the rice (Oryza sativa) genomes."
Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[37]"Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
The Rice Annotation Project (RAP)
Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E. expand/collapse author list , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
Genome Res. 17:175-183(2007)
Cited for: NUCLEOTIDE SEQUENCE.
[38]"The Rice Annotation Project Database (RAP-DB): 2008 update."
The Rice Annotation Project (RAP)
Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H. expand/collapse author list , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
Nucleic Acids Res. 36:D1028-D1033(2008)
Cited for: NUCLEOTIDE SEQUENCE.
[39]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[40]"Improved gene annotation of the rice (Oryza sativa) genomes."
Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[41]Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC073166 Genomic DNA. Translation: AAG46106.1.
AC096782 Genomic DNA. Translation: AAM93740.1.
AC118980 Genomic DNA. Translation: AAO15293.1.
DP000086 Genomic DNA. Translation: AAP54838.1.
AC108876 Genomic DNA. Translation: AAT39190.1.
AC108503 Genomic DNA. Translation: AAT58763.1.
AC121361 Genomic DNA. Translation: AAT58785.1.
AC108500 Genomic DNA. Translation: AAU90170.1.
DP000009 Genomic DNA. Translation: ABF93682.1.
AP003271 Genomic DNA. Translation: BAB89744.1.
AP004401 Genomic DNA. Translation: BAC57734.1.
AP004071 Genomic DNA. Translation: BAD07563.1.
AP004255 Genomic DNA. Translation: BAD27874.1.
AP005551 Genomic DNA. Translation: BAD33556.1.
AP008207 Genomic DNA. Translation: BAF06643.2.
AP008208 Genomic DNA. Translation: BAF09676.1.
AP008209 Genomic DNA. Translation: BAF10697.1.
AP008210 Genomic DNA. Translation: BAF15578.1.
AP008211 Genomic DNA. Translation: BAF17683.1.
AP008211 Genomic DNA. Translation: BAF17700.1.
AP008215 Genomic DNA. Translation: BAF25159.1.
AP008215 Genomic DNA. Translation: BAF25792.1.
AP008216 Genomic DNA. Translation: BAF27093.1.
AK058686 mRNA. Translation: BAG86775.1.
AK058741 mRNA. Translation: BAG86791.1.
AK059019 mRNA. Translation: BAG86871.1.
AK059098 mRNA. Translation: BAG86892.1.
AK105816 mRNA. Translation: BAG97383.1.
AK119240 mRNA. Translation: BAG99598.1.
AK119699 mRNA. Translation: BAG99753.1.
AP008213 Genomic DNA. Translation: BAH93978.1.
AL662987 Genomic DNA. Translation: CAD41377.2.
CM000138 Genomic DNA. Translation: EAZ14069.1.
CM000147 Genomic DNA. Translation: EAZ16833.1.
CM000139 Genomic DNA. Translation: EAZ24208.1.
CM000140 Genomic DNA. Translation: EAZ25381.1.
CM000141 Genomic DNA. Translation: EAZ31763.1.
CM000144 Genomic DNA. Translation: EAZ40221.1.
CM000146 Genomic DNA. Translation: EAZ45602.1.
CM000142 Genomic DNA. Translation: EEE64000.1.
CM000146 Genomic DNA. Translation: EEE69764.1.
RefSeqNP_001044729.2. NM_001051264.2.
NP_001047762.1. NM_001054297.2.
NP_001048783.1. NM_001055318.1.
NP_001053664.1. NM_001060199.1.
NP_001055769.1. NM_001062304.1.
NP_001055786.1. NM_001062321.1.
NP_001063245.1. NM_001069780.1.
NP_001063878.1. NM_001070413.2.
NP_001065179.1. NM_001071714.1.
NP_001175250.1. NM_001188321.1.
UniGeneOs.12348.
Os.57674.
Os.57861.
Os.70011.
Os.78955.
Os.79219.
Os.79965.
Os.80270.
Os.80803.
Os.80871.

3D structure databases

ProteinModelPortalQ7XUC9.
SMRQ7XUC9. Positions 9-103.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS01T0835900-00; OS01T0835900-00; OS01G0835900.
OS02T0684500-00; OS02T0684500-00; OS02G0684500.
OS03T0119900-01; OS03T0119900-01; OS03G0119900.
OS04T0583600-01; OS04T0583600-01; OS04G0583600.
OS05T0462700-01; OS05T0462700-01; OS05G0462700.
OS05T0466600-01; OS05T0466600-01; OS05G0466600.
OS07T0549900-00; OS07T0549900-00; OS07G0549900.
OS09T0433600-01; OS09T0433600-01; OS09G0433600.
OS09T0553100-00; OS09T0553100-00; OS09G0553100.
OS10T0539500-01; OS10T0539500-01; OS10G0539500.
GeneID4327457.
4330345.
4331427.
4336777.
4339029.
4339049.
4347135.
4347799.
4349248.
9270544.
KEGGosa:4327457.
osa:4330345.
osa:4331427.
osa:4336777.
osa:4339029.
osa:4339049.
osa:4347135.
osa:4347799.
osa:4349248.
osa:9270544.

Phylogenomic databases

KOK11254.
OMAYEEVRVV.

Gene expression databases

GenevestigatorQ7G823.

Family and domain databases

Gene3D1.10.20.10. 1 hit.
InterProIPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR001951. Histone_H4.
IPR019809. Histone_H4_CS.
[Graphical view]
PfamPF00125. Histone. 1 hit.
[Graphical view]
PRINTSPR00623. HISTONEH4.
SMARTSM00417. H4. 1 hit.
[Graphical view]
SUPFAMSSF47113. SSF47113. 1 hit.
PROSITEPS00047. HISTONE_H4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ7XUC9_ORYSJ
AccessionPrimary (citable) accession number: Q7XUC9
Secondary accession number(s): Q0JHY5, Q7G823
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: March 1, 2004
Last modified: July 9, 2014
This is version 111 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)