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Protein

Histone H4

Gene

Os03g0119900

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Histone H4UniRule annotation
Gene namesi
Name:Os03g0119900Imported
Synonyms:OSJNBb0064P21.1Imported, P0534A03.129Imported
Ordered Locus Names:LOC_Os03g02780Imported, LOC_Os10g39410Imported, Os01g0835900Imported, Os02g0684500Imported, Os03g0119900Imported, Os04g0583600Imported, Os05g0462700Imported, Os05g0466600Imported, Os07g0549900Imported, Os09g0433600Imported, Os09g0553100Imported, Os10g0539500Imported
ORF Names:OJ1081_G10.11Imported, OJ1212_A08.14Imported, OJ1263H11.10Imported, OJ1280_A04.1Imported, OJ1387_F08.9Imported, OJ1525_A02.10Imported, OJ1717_A09.1Imported, OsJ_03994Imported, OsJ_07955Imported, OsJ_09199Imported, OsJ_15915Imported, OsJ_18829Imported, OsJ_24666Imported, OsJ_29473Imported, OsJ_30268Imported, OsJ_32304Imported, OSJNBa0009E21.13Imported, OSJNBa0025B05.1Imported, OSJNBa0088A01.17Imported, OSNPB_010835900Imported, OSNPB_020684500Imported, OSNPB_030119900Imported, OSNPB_040583600Imported, OSNPB_050462700Imported, OSNPB_050466600Imported, OSNPB_070549900Imported, OSNPB_090433600Imported, OSNPB_090553100Imported, OSNPB_100539500Imported, P0506B12.23Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componentsi: Chromosome 1, Chromosome 10, Chromosome 2, Chromosome 3, Chromosome 4, Chromosome 5, Chromosome 7, Chromosome 9

Subcellular locationi

  • Chromosome SAAS annotation
  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chromosome, Nucleosome coreUniRule annotationSAAS annotation, NucleusUniRule annotationSAAS annotation

Interactioni

Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi39947.LOC_Os10g39410.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the histone H4 family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3467. Eukaryota.
COG2036. LUCA.
OMAiSTHNERI.
OrthoDBiEOG09360XKI.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR001951. Histone_H4.
IPR019809. Histone_H4_CS.
[Graphical view]
PRINTSiPR00623. HISTONEH4.
SMARTiSM00417. H4. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS00047. HISTONE_H4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7XUC9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL
60 70 80 90 100
IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG

FGG
Length:103
Mass (Da):11,409
Last modified:March 1, 2004 - v2
Checksum:iA9FD57725A2A7598
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC073166 Genomic DNA. Translation: AAG46106.1.
AC096782 Genomic DNA. Translation: AAM93740.1.
AC118980 Genomic DNA. Translation: AAO15293.1.
DP000086 Genomic DNA. Translation: AAP54838.1.
AC108876 Genomic DNA. Translation: AAT39190.1.
AC108503 Genomic DNA. Translation: AAT58763.1.
AC121361 Genomic DNA. Translation: AAT58785.1.
AC108500 Genomic DNA. Translation: AAU90170.1.
DP000009 Genomic DNA. Translation: ABF93682.1.
AP003271 Genomic DNA. Translation: BAB89744.1.
AP004401 Genomic DNA. Translation: BAC57734.1.
AP004071 Genomic DNA. Translation: BAD07563.1.
AP004255 Genomic DNA. Translation: BAD27874.1.
AP005551 Genomic DNA. Translation: BAD33556.1.
AP008207 Genomic DNA. Translation: BAF06643.2.
AP008208 Genomic DNA. Translation: BAF09676.1.
AP008209 Genomic DNA. Translation: BAF10697.1.
AP008210 Genomic DNA. Translation: BAF15578.1.
AP008211 Genomic DNA. Translation: BAF17683.1.
AP008211 Genomic DNA. Translation: BAF17700.1.
AP008215 Genomic DNA. Translation: BAF25159.1.
AP008215 Genomic DNA. Translation: BAF25792.1.
AP008216 Genomic DNA. Translation: BAF27093.1.
AK058686 mRNA. Translation: BAG86775.1.
AK058741 mRNA. Translation: BAG86791.1.
AK059019 mRNA. Translation: BAG86871.1.
AK059098 mRNA. Translation: BAG86892.1.
AK105816 mRNA. Translation: BAG97383.1.
AK119240 mRNA. Translation: BAG99598.1.
AK119699 mRNA. Translation: BAG99753.1.
AP008213 Genomic DNA. Translation: BAH93978.1.
AP014957 Genomic DNA. Translation: BAS75107.1.
AP014958 Genomic DNA. Translation: BAS80323.1.
AP014959 Genomic DNA. Translation: BAS82016.1.
AP014960 Genomic DNA. Translation: BAS90673.1.
AP014961 Genomic DNA. Translation: BAS94424.1.
AP014961 Genomic DNA. Translation: BAS94452.1.
AP014963 Genomic DNA. Translation: BAT02038.1.
AP014965 Genomic DNA. Translation: BAT08228.1.
AP014965 Genomic DNA. Translation: BAT09322.1.
AP014966 Genomic DNA. Translation: BAT11849.1.
AL662987 Genomic DNA. Translation: CAD41377.2.
CM000138 Genomic DNA. Translation: EAZ14069.1.
CM000147 Genomic DNA. Translation: EAZ16833.1.
CM000139 Genomic DNA. Translation: EAZ24208.1.
CM000140 Genomic DNA. Translation: EAZ25381.1.
CM000141 Genomic DNA. Translation: EAZ31763.1.
CM000144 Genomic DNA. Translation: EAZ40221.1.
CM000146 Genomic DNA. Translation: EAZ45602.1.
CM000142 Genomic DNA. Translation: EEE64000.1.
CM000146 Genomic DNA. Translation: EEE69764.1.
RefSeqiXP_015610672.1. XM_015755186.1.
XP_015612705.1. XM_015757219.1.
XP_015612982.1. XM_015757496.1.
XP_015614455.1. XM_015758969.1.
XP_015627403.1. XM_015771917.1.
XP_015628561.1. XM_015773075.1.
XP_015636819.1. XM_015781333.1.
XP_015637997.1. XM_015782511.1.
XP_015639309.1. XM_015783823.1.
XP_015645242.1. XM_015789756.1.
UniGeneiOs.57674.
Os.57861.
Os.70011.
Os.80270.
Os.80803.
Os.80871.

Genome annotation databases

EnsemblPlantsiOS01T0835900-00; OS01T0835900-00; OS01G0835900.
OS02T0684500-00; OS02T0684500-00; OS02G0684500.
OS03T0119900-01; OS03T0119900-01; OS03G0119900.
OS04T0583600-01; OS04T0583600-01; OS04G0583600.
OS05T0462700-01; OS05T0462700-01; OS05G0462700.
OS05T0466600-01; OS05T0466600-01; OS05G0466600.
OS07T0549900-00; OS07T0549900-00; OS07G0549900.
OS09T0433600-01; OS09T0433600-01; OS09G0433600.
OS09T0553100-00; OS09T0553100-00; OS09G0553100.
OS10T0539500-01; OS10T0539500-01; OS10G0539500.
GeneIDi4327457.
4330345.
4331427.
4336777.
4339029.
4339049.
4347135.
4347799.
4349248.
9270544.
GrameneiOS01T0835900-00; OS01T0835900-00; OS01G0835900.
OS02T0684500-00; OS02T0684500-00; OS02G0684500.
OS03T0119900-01; OS03T0119900-01; OS03G0119900.
OS04T0583600-01; OS04T0583600-01; OS04G0583600.
OS05T0462700-01; OS05T0462700-01; OS05G0462700.
OS05T0466600-01; OS05T0466600-01; OS05G0466600.
OS07T0549900-00; OS07T0549900-00; OS07G0549900.
OS09T0433600-01; OS09T0433600-01; OS09G0433600.
OS09T0553100-00; OS09T0553100-00; OS09G0553100.
OS10T0539500-01; OS10T0539500-01; OS10G0539500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC073166 Genomic DNA. Translation: AAG46106.1.
AC096782 Genomic DNA. Translation: AAM93740.1.
AC118980 Genomic DNA. Translation: AAO15293.1.
DP000086 Genomic DNA. Translation: AAP54838.1.
AC108876 Genomic DNA. Translation: AAT39190.1.
AC108503 Genomic DNA. Translation: AAT58763.1.
AC121361 Genomic DNA. Translation: AAT58785.1.
AC108500 Genomic DNA. Translation: AAU90170.1.
DP000009 Genomic DNA. Translation: ABF93682.1.
AP003271 Genomic DNA. Translation: BAB89744.1.
AP004401 Genomic DNA. Translation: BAC57734.1.
AP004071 Genomic DNA. Translation: BAD07563.1.
AP004255 Genomic DNA. Translation: BAD27874.1.
AP005551 Genomic DNA. Translation: BAD33556.1.
AP008207 Genomic DNA. Translation: BAF06643.2.
AP008208 Genomic DNA. Translation: BAF09676.1.
AP008209 Genomic DNA. Translation: BAF10697.1.
AP008210 Genomic DNA. Translation: BAF15578.1.
AP008211 Genomic DNA. Translation: BAF17683.1.
AP008211 Genomic DNA. Translation: BAF17700.1.
AP008215 Genomic DNA. Translation: BAF25159.1.
AP008215 Genomic DNA. Translation: BAF25792.1.
AP008216 Genomic DNA. Translation: BAF27093.1.
AK058686 mRNA. Translation: BAG86775.1.
AK058741 mRNA. Translation: BAG86791.1.
AK059019 mRNA. Translation: BAG86871.1.
AK059098 mRNA. Translation: BAG86892.1.
AK105816 mRNA. Translation: BAG97383.1.
AK119240 mRNA. Translation: BAG99598.1.
AK119699 mRNA. Translation: BAG99753.1.
AP008213 Genomic DNA. Translation: BAH93978.1.
AP014957 Genomic DNA. Translation: BAS75107.1.
AP014958 Genomic DNA. Translation: BAS80323.1.
AP014959 Genomic DNA. Translation: BAS82016.1.
AP014960 Genomic DNA. Translation: BAS90673.1.
AP014961 Genomic DNA. Translation: BAS94424.1.
AP014961 Genomic DNA. Translation: BAS94452.1.
AP014963 Genomic DNA. Translation: BAT02038.1.
AP014965 Genomic DNA. Translation: BAT08228.1.
AP014965 Genomic DNA. Translation: BAT09322.1.
AP014966 Genomic DNA. Translation: BAT11849.1.
AL662987 Genomic DNA. Translation: CAD41377.2.
CM000138 Genomic DNA. Translation: EAZ14069.1.
CM000147 Genomic DNA. Translation: EAZ16833.1.
CM000139 Genomic DNA. Translation: EAZ24208.1.
CM000140 Genomic DNA. Translation: EAZ25381.1.
CM000141 Genomic DNA. Translation: EAZ31763.1.
CM000144 Genomic DNA. Translation: EAZ40221.1.
CM000146 Genomic DNA. Translation: EAZ45602.1.
CM000142 Genomic DNA. Translation: EEE64000.1.
CM000146 Genomic DNA. Translation: EEE69764.1.
RefSeqiXP_015610672.1. XM_015755186.1.
XP_015612705.1. XM_015757219.1.
XP_015612982.1. XM_015757496.1.
XP_015614455.1. XM_015758969.1.
XP_015627403.1. XM_015771917.1.
XP_015628561.1. XM_015773075.1.
XP_015636819.1. XM_015781333.1.
XP_015637997.1. XM_015782511.1.
XP_015639309.1. XM_015783823.1.
XP_015645242.1. XM_015789756.1.
UniGeneiOs.57674.
Os.57861.
Os.70011.
Os.80270.
Os.80803.
Os.80871.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os10g39410.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0835900-00; OS01T0835900-00; OS01G0835900.
OS02T0684500-00; OS02T0684500-00; OS02G0684500.
OS03T0119900-01; OS03T0119900-01; OS03G0119900.
OS04T0583600-01; OS04T0583600-01; OS04G0583600.
OS05T0462700-01; OS05T0462700-01; OS05G0462700.
OS05T0466600-01; OS05T0466600-01; OS05G0466600.
OS07T0549900-00; OS07T0549900-00; OS07G0549900.
OS09T0433600-01; OS09T0433600-01; OS09G0433600.
OS09T0553100-00; OS09T0553100-00; OS09G0553100.
OS10T0539500-01; OS10T0539500-01; OS10G0539500.
GeneIDi4327457.
4330345.
4331427.
4336777.
4339029.
4339049.
4347135.
4347799.
4349248.
9270544.
GrameneiOS01T0835900-00; OS01T0835900-00; OS01G0835900.
OS02T0684500-00; OS02T0684500-00; OS02G0684500.
OS03T0119900-01; OS03T0119900-01; OS03G0119900.
OS04T0583600-01; OS04T0583600-01; OS04G0583600.
OS05T0462700-01; OS05T0462700-01; OS05G0462700.
OS05T0466600-01; OS05T0466600-01; OS05G0466600.
OS07T0549900-00; OS07T0549900-00; OS07G0549900.
OS09T0433600-01; OS09T0433600-01; OS09G0433600.
OS09T0553100-00; OS09T0553100-00; OS09G0553100.
OS10T0539500-01; OS10T0539500-01; OS10G0539500.

Phylogenomic databases

eggNOGiKOG3467. Eukaryota.
COG2036. LUCA.
OMAiSTHNERI.
OrthoDBiEOG09360XKI.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR001951. Histone_H4.
IPR019809. Histone_H4_CS.
[Graphical view]
PRINTSiPR00623. HISTONEH4.
SMARTiSM00417. H4. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS00047. HISTONE_H4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ7XUC9_ORYSJ
AccessioniPrimary (citable) accession number: Q7XUC9
Secondary accession number(s): Q0JHY5, Q7G823
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: March 1, 2004
Last modified: September 7, 2016
This is version 133 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.