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Q7XRA1

- ADC2_ORYSJ

UniProt

Q7XRA1 - ADC2_ORYSJ

Protein

Arginine decarboxylase 2

Gene

ADC2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 2 (01 Mar 2004)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-arginine = agmatine + CO2.

    Cofactori

    Pyridoxal phosphate.By similarity
    Magnesium.By similarity

    Pathwayi

    GO - Molecular functioni

    1. arginine decarboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. arginine catabolic process Source: InterPro
    2. putrescine biosynthetic process Source: UniProtKB-KW
    3. spermidine biosynthetic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Decarboxylase, Lyase

    Keywords - Biological processi

    Putrescine biosynthesis, Spermidine biosynthesis

    Keywords - Ligandi

    Magnesium, Pyridoxal phosphate

    Enzyme and pathway databases

    UniPathwayiUPA00186; UER00284.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Arginine decarboxylase 2 (EC:4.1.1.19)
    Short name:
    ARGDC2
    Short name:
    OsADC2
    Gene namesi
    Name:ADC2
    Ordered Locus Names:Os04g0107600, LOC_Os04g01690
    ORF Names:OsJ_13525, OSJNBb0085F13.14
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 4

    Organism-specific databases

    GrameneiQ7XRA1.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 623623Arginine decarboxylase 2PRO_0000392206Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei109 – 1091N6-(pyridoxal phosphate)lysineBy similarity

    Expressioni

    Tissue specificityi

    Expressed in stems (at protein level).1 Publication

    Structurei

    3D structure databases

    ProteinModelPortaliQ7XRA1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni295 – 30511Substrate-bindingBy similarityAdd
    BLAST

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1166.
    KOiK01583.
    OMAiDMSVAYG.

    Family and domain databases

    Gene3Di2.40.37.10. 2 hits.
    3.20.20.10. 1 hit.
    InterProiIPR009006. Ala_racemase/Decarboxylase_C.
    IPR002985. Arg_decrbxlase.
    IPR022643. De-COase2_C.
    IPR022657. De-COase2_CS.
    IPR022644. De-COase2_N.
    IPR022653. De-COase2_pyr-phos_BS.
    IPR000183. Orn/DAP/Arg_de-COase.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF02784. Orn_Arg_deC_N. 1 hit.
    PF00278. Orn_DAP_Arg_deC. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001336. Arg_decrbxlase. 1 hit.
    PRINTSiPR01180. ARGDCRBXLASE.
    PR01179. ODADCRBXLASE.
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR01273. speA. 1 hit.
    PROSITEiPS00878. ODR_DC_2_1. 1 hit.
    PS00879. ODR_DC_2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q7XRA1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKKNYGQVY NILGWGDPYF TVNSHGHLAV KPHGRDTMSG QDIDVHSVIH    50
    RALATTITTN DGDKKPQFPM ILRFPDVLKN RLDSLHAAFH GAVDSTGYAS 100
    RYQGVFPIKV NQNKAVVQDL VTFGHGYSYG LEAGSKPELL IAMSCLAKAK 150
    PGAYLVCNGY KDADYVALAL SARAMGLNAI IVLEMEEELD IVVEQSARLG 200
    VEPVIGVRAK LLTKIPGHFG STAGKHGKFG MLADKIYEVA GKLKKMGKLH 250
    WLKLLHYHVG SMIPTTDIVY NAAAEAAGIY CALVKEHGAT GMTTLDCGGG 300
    LGVDYDGTRS GSSDMSVAYG LEQYASSIVQ AVRLTCDDNG VPHPVLCTES 350
    GRAMASHHSM IILEALSAIP EPQDEEDTHH RLLSKIQDLS SKQPRTAHTV 400
    NGGGGVDAMH SHAVELKKHG IEMYKLAKKL SKRVTGDANG IYNYHMNLSV 450
    FSLVPDFWGI GQLFPMMPVS RLNEKPTING TLVDITCDSD GKVEKFIRDA 500
    VTLPLHPLDD AAAEHGGYYV AALLSGAYQE ALACKHNLFS GPTLVRVESA 550
    GGGGAFKIVS VELGPTAEEV IGTMRYDVKN DISDVIEKVA TENGVWPMVE 600
    PLMKKGLTTM PYLNDYKPPK TTF 623
    Length:623
    Mass (Da):67,335
    Last modified:March 1, 2004 - v2
    Checksum:iA4980874AE0FBA87
    GO

    Sequence cautioni

    The sequence ACN65507.1 differs from that shown. Reason: Sequencing errors.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FJ746894 mRNA. Translation: ACN65507.1. Sequence problems.
    AL606620 Genomic DNA. Translation: CAE02767.2.
    AP008210 Genomic DNA. Translation: BAF13932.1.
    CM000141 Genomic DNA. Translation: EAZ29450.1.
    AK058573 mRNA. Translation: BAG86737.1.
    AK121110 mRNA. Translation: BAH00321.1.
    RefSeqiNP_001052018.1. NM_001058553.1.
    UniGeneiOs.50413.

    Genome annotation databases

    EnsemblPlantsiOS04T0107600-01; OS04T0107600-01; OS04G0107600.
    OS04T0107600-02; OS04T0107600-02; OS04G0107600.
    GeneIDi4334917.
    KEGGiosa:4334917.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FJ746894 mRNA. Translation: ACN65507.1 . Sequence problems.
    AL606620 Genomic DNA. Translation: CAE02767.2 .
    AP008210 Genomic DNA. Translation: BAF13932.1 .
    CM000141 Genomic DNA. Translation: EAZ29450.1 .
    AK058573 mRNA. Translation: BAG86737.1 .
    AK121110 mRNA. Translation: BAH00321.1 .
    RefSeqi NP_001052018.1. NM_001058553.1.
    UniGenei Os.50413.

    3D structure databases

    ProteinModelPortali Q7XRA1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS04T0107600-01 ; OS04T0107600-01 ; OS04G0107600 .
    OS04T0107600-02 ; OS04T0107600-02 ; OS04G0107600 .
    GeneIDi 4334917.
    KEGGi osa:4334917.

    Organism-specific databases

    Gramenei Q7XRA1.

    Phylogenomic databases

    eggNOGi COG1166.
    KOi K01583.
    OMAi DMSVAYG.

    Enzyme and pathway databases

    UniPathwayi UPA00186 ; UER00284 .

    Family and domain databases

    Gene3Di 2.40.37.10. 2 hits.
    3.20.20.10. 1 hit.
    InterProi IPR009006. Ala_racemase/Decarboxylase_C.
    IPR002985. Arg_decrbxlase.
    IPR022643. De-COase2_C.
    IPR022657. De-COase2_CS.
    IPR022644. De-COase2_N.
    IPR022653. De-COase2_pyr-phos_BS.
    IPR000183. Orn/DAP/Arg_de-COase.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF02784. Orn_Arg_deC_N. 1 hit.
    PF00278. Orn_DAP_Arg_deC. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001336. Arg_decrbxlase. 1 hit.
    PRINTSi PR01180. ARGDCRBXLASE.
    PR01179. ODADCRBXLASE.
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR01273. speA. 1 hit.
    PROSITEi PS00878. ODR_DC_2_1. 1 hit.
    PS00879. ODR_DC_2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular characterization of the Arginine decarboxylase gene family in rice."
      Peremarti A., Bassie L., Zhu C., Christou P., Capell T.
      Transgenic Res. 19:785-797(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
      Strain: cv. Eyi 105.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    5. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    6. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiADC2_ORYSJ
    AccessioniPrimary (citable) accession number: Q7XRA1
    Secondary accession number(s): C0LN13
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 23, 2010
    Last sequence update: March 1, 2004
    Last modified: October 1, 2014
    This is version 78 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3