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Q7XRA1

- ADC2_ORYSJ

UniProt

Q7XRA1 - ADC2_ORYSJ

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Protein

Arginine decarboxylase 2

Gene

ADC2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

Protein has several cofactor binding sites:

Pathwayi

GO - Molecular functioni

  1. arginine decarboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginine catabolic process Source: InterPro
  2. putrescine biosynthetic process Source: UniProtKB-KW
  3. spermidine biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Decarboxylase, Lyase

Keywords - Biological processi

Putrescine biosynthesis, Spermidine biosynthesis

Keywords - Ligandi

Magnesium, Pyridoxal phosphate

Enzyme and pathway databases

UniPathwayiUPA00186; UER00284.

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine decarboxylase 2 (EC:4.1.1.19)
Short name:
ARGDC2
Short name:
OsADC2
Gene namesi
Name:ADC2
Ordered Locus Names:Os04g0107600, LOC_Os04g01690
ORF Names:OsJ_13525, OSJNBb0085F13.14
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 4

Organism-specific databases

GrameneiQ7XRA1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 623623Arginine decarboxylase 2PRO_0000392206Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei109 – 1091N6-(pyridoxal phosphate)lysineBy similarity

Expressioni

Tissue specificityi

Expressed in stems (at protein level).1 Publication

Structurei

3D structure databases

ProteinModelPortaliQ7XRA1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni295 – 30511Substrate-bindingBy similarityAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1166.
InParanoidiQ7XRA1.
KOiK01583.
OMAiDMSVAYG.

Family and domain databases

Gene3Di2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProiIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFiPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSiPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR01273. speA. 1 hit.
PROSITEiPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7XRA1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKKNYGQVY NILGWGDPYF TVNSHGHLAV KPHGRDTMSG QDIDVHSVIH
60 70 80 90 100
RALATTITTN DGDKKPQFPM ILRFPDVLKN RLDSLHAAFH GAVDSTGYAS
110 120 130 140 150
RYQGVFPIKV NQNKAVVQDL VTFGHGYSYG LEAGSKPELL IAMSCLAKAK
160 170 180 190 200
PGAYLVCNGY KDADYVALAL SARAMGLNAI IVLEMEEELD IVVEQSARLG
210 220 230 240 250
VEPVIGVRAK LLTKIPGHFG STAGKHGKFG MLADKIYEVA GKLKKMGKLH
260 270 280 290 300
WLKLLHYHVG SMIPTTDIVY NAAAEAAGIY CALVKEHGAT GMTTLDCGGG
310 320 330 340 350
LGVDYDGTRS GSSDMSVAYG LEQYASSIVQ AVRLTCDDNG VPHPVLCTES
360 370 380 390 400
GRAMASHHSM IILEALSAIP EPQDEEDTHH RLLSKIQDLS SKQPRTAHTV
410 420 430 440 450
NGGGGVDAMH SHAVELKKHG IEMYKLAKKL SKRVTGDANG IYNYHMNLSV
460 470 480 490 500
FSLVPDFWGI GQLFPMMPVS RLNEKPTING TLVDITCDSD GKVEKFIRDA
510 520 530 540 550
VTLPLHPLDD AAAEHGGYYV AALLSGAYQE ALACKHNLFS GPTLVRVESA
560 570 580 590 600
GGGGAFKIVS VELGPTAEEV IGTMRYDVKN DISDVIEKVA TENGVWPMVE
610 620
PLMKKGLTTM PYLNDYKPPK TTF
Length:623
Mass (Da):67,335
Last modified:March 1, 2004 - v2
Checksum:iA4980874AE0FBA87
GO

Sequence cautioni

The sequence ACN65507.1 differs from that shown. Reason: Sequencing errors.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FJ746894 mRNA. Translation: ACN65507.1. Sequence problems.
AL606620 Genomic DNA. Translation: CAE02767.2.
AP008210 Genomic DNA. Translation: BAF13932.1.
CM000141 Genomic DNA. Translation: EAZ29450.1.
AK058573 mRNA. Translation: BAG86737.1.
AK121110 mRNA. Translation: BAH00321.1.
RefSeqiNP_001052018.1. NM_001058553.1.
UniGeneiOs.50413.

Genome annotation databases

EnsemblPlantsiOS04T0107600-01; OS04T0107600-01; OS04G0107600.
OS04T0107600-02; OS04T0107600-02; OS04G0107600.
GeneIDi4334917.
KEGGiosa:4334917.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FJ746894 mRNA. Translation: ACN65507.1 . Sequence problems.
AL606620 Genomic DNA. Translation: CAE02767.2 .
AP008210 Genomic DNA. Translation: BAF13932.1 .
CM000141 Genomic DNA. Translation: EAZ29450.1 .
AK058573 mRNA. Translation: BAG86737.1 .
AK121110 mRNA. Translation: BAH00321.1 .
RefSeqi NP_001052018.1. NM_001058553.1.
UniGenei Os.50413.

3D structure databases

ProteinModelPortali Q7XRA1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS04T0107600-01 ; OS04T0107600-01 ; OS04G0107600 .
OS04T0107600-02 ; OS04T0107600-02 ; OS04G0107600 .
GeneIDi 4334917.
KEGGi osa:4334917.

Organism-specific databases

Gramenei Q7XRA1.

Phylogenomic databases

eggNOGi COG1166.
InParanoidi Q7XRA1.
KOi K01583.
OMAi DMSVAYG.

Enzyme and pathway databases

UniPathwayi UPA00186 ; UER00284 .

Family and domain databases

Gene3Di 2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProi IPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view ]
PIRSFi PIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSi PR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR01273. speA. 1 hit.
PROSITEi PS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular characterization of the Arginine decarboxylase gene family in rice."
    Peremarti A., Bassie L., Zhu C., Christou P., Capell T.
    Transgenic Res. 19:785-797(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
    Strain: cv. Eyi 105.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  6. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiADC2_ORYSJ
AccessioniPrimary (citable) accession number: Q7XRA1
Secondary accession number(s): C0LN13
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 23, 2010
Last sequence update: March 1, 2004
Last modified: November 26, 2014
This is version 80 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3