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Protein

Probable protein phosphatase 2C 41

Gene

Os04g0452000

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi72 – 721Manganese 1By similarity
Metal bindingi72 – 721Manganese 2By similarity
Metal bindingi73 – 731Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi234 – 2341Manganese 2By similarity
Metal bindingi273 – 2731Manganese 2By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 41 (EC:3.1.3.16)
Short name:
OsPP2C41
Gene namesi
Ordered Locus Names:Os04g0452000, Os04g0451900, LOC_Os04g37904
ORF Names:OsJ_014406, OSJNBa0086B14.22/OSJNBa0086B14.21
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 4

Organism-specific databases

GrameneiQ7XQU7.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 284284Probable protein phosphatase 2C 41PRO_0000363288Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os04g37904.1.

Structurei

3D structure databases

ProteinModelPortaliQ7XQU7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini35 – 282248PPM-type phosphatasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PPM-type phosphatase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000233896.
InParanoidiQ7XQU7.
OMAiNTERDDI.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR015655. PP2C.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS51746. PPM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7XQU7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRFCCFGAG CSEFSGHAST SSGKGKGIQG QVKVSYGFYL VRGMTNHPME
60 70 80 90 100
DYHVAELAEE KGNELGLFAI FDGHLGDTVP AYLQKNLFAN ILNEEEFLTQ
110 120 130 140 150
PDRAIIKAYE KTDQAILSHT PDLGQGGSTA VTAILLNGRK LWVANVGDSR
160 170 180 190 200
AVLLKGGRPI QMSTDHDPNV ERSAIENRGG FVSNMPGDVP RVCGQLAVSR
210 220 230 240 250
AFGDRNLKSL LKSEPDIKVE DIDYTAELLV LASDGLWKVM NNQEVVDVAK
260 270 280
RFKDPQAAAK QLTAEALKRD SKDDISCVVV RFRM
Length:284
Mass (Da):31,010
Last modified:February 10, 2009 - v2
Checksum:i15622965F0A8CD0B
GO

Sequence cautioni

The sequence BAF14862.2 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAH01419.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence CAE02979.1 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes Os04g0451900 and Os04g0452000.Curated
The sequence CAE02980.1 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes Os04g0451900 and Os04g0452000.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti65 – 651L → F in BAH01419 (Ref. 5) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606615 Genomic DNA. Translation: CAE02979.1. Sequence problems.
AL606615 Genomic DNA. Translation: CAE02980.1. Sequence problems.
AP008210 Genomic DNA. Translation: BAF14862.2. Sequence problems.
CM000141 Genomic DNA. Translation: EEE61099.1.
AK243041 mRNA. Translation: BAH01419.1. Different initiation.
RefSeqiNP_001052948.2. NM_001059483.2.
UniGeneiOs.12049.

Genome annotation databases

EnsemblPlantsiOS04T0452000-01; OS04T0452000-01; OS04G0452000.
GeneIDi4336006.
KEGGiosa:4336006.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606615 Genomic DNA. Translation: CAE02979.1. Sequence problems.
AL606615 Genomic DNA. Translation: CAE02980.1. Sequence problems.
AP008210 Genomic DNA. Translation: BAF14862.2. Sequence problems.
CM000141 Genomic DNA. Translation: EEE61099.1.
AK243041 mRNA. Translation: BAH01419.1. Different initiation.
RefSeqiNP_001052948.2. NM_001059483.2.
UniGeneiOs.12049.

3D structure databases

ProteinModelPortaliQ7XQU7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os04g37904.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS04T0452000-01; OS04T0452000-01; OS04G0452000.
GeneIDi4336006.
KEGGiosa:4336006.

Organism-specific databases

GrameneiQ7XQU7.

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000233896.
InParanoidiQ7XQU7.
OMAiNTERDDI.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR015655. PP2C.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS51746. PPM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Oryza sativa full length cDNA."
    The rice full-length cDNA consortium
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiP2C41_ORYSJ
AccessioniPrimary (citable) accession number: Q7XQU7
Secondary accession number(s): B7F9X1, B9FFG5, Q7XQU8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 10, 2009
Last modified: June 24, 2015
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.