Reviewed, UniProtKB/Swiss-Prot Q7XM13 (WOX1A_ORYSJ)

Names and origin

Protein names

Recommended name:
    WUSCHEL-related homeobox 1A
Alternative name(s):
    OsWOX1A
      Short name=OsWOX1
    Protein WUS

Gene names

Name:	WOX1A
Synonyms:	WOX1, WUS
Ordered Locus Names:	Os04g0663600, LOC_Os04g56780
ORF Names:	OSJNBa0084K01.1

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	289 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Transcription factor which may be involved in developmental processes By similarity.
Subcellular location	NucleusBy similarity.
Sequence similarities	Belongs to the WUS homeobox family. Contains 1 homeobox DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Gene Ontology (GO)
Biological process	multicellular organismal development Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 289	289	WUSCHEL-related homeobox 1A		PRO_0000308632
Regions
	DNA binding	31 – 96	66	Homeobox; WUS-type
	Compositional bias	5 – 11	7	Poly-Gln

Sequences

	Sequence		Length	Mass (Da)
	Q7XM13-1 [UniParc]. Last modified March 1, 2004. Version 2. Checksum: 2E52E631ACB445C3	FASTA	289	31,004
	10 20 30 40 50 60 MDHMQQQQRQ QVGGGGGEEV AGRGGVPVCR PSGTRWTPTT EQIKILRELY YSCGIRSPNS 70 80 90 100 110 120 EQIQRIAAML RQYGRIEGKN VFYWFQNHKA RERQKKRLTT LDVTTTTAAA ADADASHLAV 130 140 150 160 170 180 LSLSPTAAGA TAPSFPGFYV GNGGAVQTDQ ANVVNWDCTA MAAEKTFLQD YMGVSGVGCA 190 200 210 220 230 240 AGAAPTPWAM TTTTREPETL PLFPVVFVGG DGAHRHAVHG GFPSNFQRWG SAAATSYTIT 250 260 270 280 VQQHLQQHNF YSSSSSQLHS QDGPAAGTSL ELTLSSYYCS CSPYPAGSM

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution." Nardmann J., Werr W. Mol. Biol. Evol. 23:2492-2504(2006) [PubMed: 16987950] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]	"Sequence and analysis of rice chromosome 4." Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L. , Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B. Nature 420:316-320(2002) [PubMed: 12447439] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development." Dai M., Hu Y., Zhao Y., Liu H., Zhou D.-X. Plant Physiol. 144:380-390(2007) [PubMed: 17351053] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AM234746 mRNA. Translation: CAJ84138.1. AL606999 Genomic DNA. Translation: CAE04846.2.
3D structure databases
ModBase	Search...
Organism-specific databases
Gramene	Q7XM13.
Family and domain databases
InterPro	IPR001356. Homeobox. [Graphical view]
Pfam	PF00046. Homeobox. 1 hit. [Graphical view]
ProDom	PD000010. Homeobox. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00389. HOX. 1 hit. [Graphical view]
PROSITE	PS00027. HOMEOBOX_1. False negative. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

WOX1A_ORYSJ

Accession

Primary (citable) accession number: Q7XM13
Secondary accession number(s): A0AAS7

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 23, 2007
Last sequence update:	March 1, 2004
Last modified:	November 25, 2008
This is version 41 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)