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Protein

Probable E3 ubiquitin-protein ligase XBOS34

Gene

XBOS34

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N6-ubiquitinyl-[acceptor protein]-L-lysine.

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri462 – 501RING-typePROSITE-ProRule annotationAdd BLAST40

GO - Molecular functioni

Keywordsi

Molecular functionTransferase
Biological processUbl conjugation pathway
LigandMetal-binding, Zinc

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable E3 ubiquitin-protein ligase XBOS34 (EC:2.3.2.27)
Alternative name(s):
Ankyrin repeat domain and RING finger-containing protein XBOS34
RING-type E3 ubiquitin transferase XBOS34
XB3 protein homolog 4
Gene namesi
Name:XBOS34
Ordered Locus Names:Os07g0446100, LOC_Os07g26490
ORF Names:P0030H06.109-1, P0030H06.109-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003957481 – 513Probable E3 ubiquitin-protein ligase XBOS34Add BLAST513

Proteomic databases

PaxDbiQ7XI08.

Expressioni

Gene expression databases

ExpressionAtlasiQ7XI08. baseline and differential.
GenevisibleiQ7XI08. OS.

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

ProteinModelPortaliQ7XI08.
SMRiQ7XI08.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati39 – 69ANK 1Add BLAST31
Repeati75 – 104ANK 2Add BLAST30
Repeati108 – 137ANK 3Add BLAST30

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri462 – 501RING-typePROSITE-ProRule annotationAdd BLAST40

Keywords - Domaini

ANK repeat, Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IFCZ. Eukaryota.
ENOG410XNPA. LUCA.
HOGENOMiHOG000242293.
InParanoidiQ7XI08.
OMAiCGWMREN.
OrthoDBiEOG093609ME.

Family and domain databases

CDDicd00204. ANK. 1 hit.
Gene3Di1.25.40.20. 1 hit.
InterProiView protein in InterPro
IPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR036770. Ankyrin_rpt-contain_sf.
IPR001841. Znf_RING.
PfamiView protein in Pfam
PF00023. Ank. 1 hit.
SMARTiView protein in SMART
SM00248. ANK. 3 hits.
SM00184. RING. 1 hit.
SUPFAMiSSF48403. SSF48403. 1 hit.
PROSITEiView protein in PROSITE
PS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 2 hits.
PS50089. ZF_RING_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7XI08-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLQQSKEEL VYQQVNYGNA DGIRALRAQG AGLEWIDKEG KTPLMVASMR
60 70 80 90 100
PDLINVVQVL IELGANVNAY RPGSYCGTAL HHAAKKGLEQ TVHLLLSHGA
110 120 130 140 150
NPFITNDDCH TALDLAREKG HVNVVRAIEG RISLFCGWMR ENYGPGFLEA
160 170 180 190 200
FAPQFLTRKI WAVILPREAR NQTRPLKLEL TIYPELQASK PQAVIKLWKC
210 220 230 240 250
QLEEPKFNQA NPSVTIFDKG TRTRYKLLPV CEGDKQQLQW FYSACCGIPQ
260 270 280 290 300
VASMVPAQPA NAPLPNPSSA SSLPSVISTP SKEDAELAMA INASILSAIA
310 320 330 340 350
EGVPDVQPIT TTTATNDWGN PPSNSLNGWG PPDTSAPSKT SGQVPVVTSS
360 370 380 390 400
SSTYNGWDVP GTSSGQSSSK HNKSQNSTFV VPQEALPSLP VPTAPPLAVG
410 420 430 440 450
TFYDGPIQYP SIDSTPVDVT MPSADGGTAV SSAKPAENEG DAKPAESDAN
460 470 480 490 500
ASNSGNTPPG TCVICLDAPV EGACIPCGHM AGCMSCLKDI ESKKWGCPIC
510
RAKINQIIRL YAV
Length:513
Mass (Da):54,729
Last modified:October 1, 2003 - v1
Checksum:iDC80CDED10D38017
GO

Sequence cautioni

The sequence AK100927 differs from that shown. Reason: Frameshift at position 321.Curated
The sequence BAC79950 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004395 Genomic DNA. Translation: BAC79949.1.
AP004395 Genomic DNA. Translation: BAC79950.1. Sequence problems.
AP008213 Genomic DNA. Translation: BAF21449.1.
AP014963 Genomic DNA. Translation: BAT01291.1.
AK100927 mRNA. No translation available.
RefSeqiXP_015647431.1. XM_015791945.1.
UniGeneiOs.10124.

Genome annotation databases

EnsemblPlantsiOS07T0446100-01; OS07T0446100-01; OS07G0446100.
GeneIDi4343110.
GrameneiOS07T0446100-01; OS07T0446100-01; OS07G0446100.
KEGGiosa:4343110.

Similar proteinsi

Entry informationi

Entry nameiXB34_ORYSJ
AccessioniPrimary (citable) accession number: Q7XI08
Secondary accession number(s): A0A0P0X5W8, Q7XI07
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 13, 2010
Last sequence update: October 1, 2003
Last modified: October 25, 2017
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations