MADS-box protein AGL53 - Arabidopsis thaliana (Mouse-ear cress)

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Unreviewed, UniProtKB/TrEMBL Q7X9N2 (Q7X9N2_ARATH)

Last modified April 14, 2009. Version 33. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
MADS-box protein AGL53 EMBL AAN52781.1

Gene names

Ordered Locus Names:

At5g27070 TAIR At5g27070

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	287 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subcellular location	Nucleus By similarity. RuleBase RU000476V3
Sequence similarities	Contains 1 MADS-box domain. RuleBase RU000476V3 Spearmint SPM002100

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000476V3 Spearmint SPM002100
Cellular component	Nucleus RuleBase RU000476V3 Spearmint SPM002100
Ligand	DNA-binding RuleBase RU000476V3 Spearmint SPM002100
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro plasma membrane Inferred from direct assay. Source: TAIR
Molecular function	protein binding Inferred from physical interaction. Source: IntAct sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
	Q2V412	1	EBI-622264,EBI-1238781
CALM	P62157	1	EBI-622264,EBI-397403	From a different organism.
CAM1	P25854	1	EBI-622264,EBI-1235664
CAM6	Q03509	1	EBI-622264,EBI-1236097
CAM7	P59220	1	EBI-622264,EBI-1236031
CML10	P30187	1	EBI-622264,EBI-1238722
CML8	O23320	1	EBI-622264,EBI-1237764
CML9	Q9S744	1	EBI-622264,EBI-1236048

Sequences

Sequence

Length

Mass (Da)

Tools

Q7X9N2-1 [UniParc].

Last modified October 1, 2003. Version 1.
Checksum: 2494E62537A884E2
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287

32,684

        10         20         30         40         50         60 
MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV 

        70         80         90        100        110        120 
CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK RTNLSLFLRK KILDDTKLSE 

       130        140        150        160        170        180 
KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW 

       190        200        210        220        230        240 
TEPLMSGVSN TEQDLSTSSL SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS 

       250        260        270        280 
GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN

References

[1]

"Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world."
Parenicova L., de Folter S., Kieffer M., Horner D.S., Favalli C., Busscher J., Cook H.E., Ingram R.M., Kater M.M., Davies B., Angenent G.C., Colombo L.
Plant Cell 15:1538-1551(2003) [PubMed: 12837945] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Inflorescence EMBL AAN52781.1.

[2]

Folter S. de, Busscher-Lange J., Angenent G.
Submitted (AUG-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Inflorescence EMBL AAN52781.1.

Cross-references

Sequence databases
	AY141217 mRNA. Translation: AAN52781.1.
IPI	IPI00829355.
RefSeq	NP_198059.1.
UniGene	At.30836
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q7X9N2. 14 interactions.
Genome annotation databases
GeneID	832765.
GenomeReviews	Gene locus AT5G27070 in contig BA000015_GR.
KEGG	ath:AT5G27070.
NMPDR	fig\|3702.1.peg.24910.
Organism-specific databases
TAIR	At5g27070.
Family and domain databases
InterPro	IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF00319. SRF-TF. 1 hit. [Graphical view]
SMART	SM00432. MADS. 1 hit. [Graphical view]
PROSITE	PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7X9N2_ARATH

Accession

Primary (citable) accession number: Q7X9N2

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	April 14, 2009
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequences · References · Cross-references · Entry information