MADS-box protein AGL79 - Arabidopsis thaliana (Mouse-ear cress)

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Unreviewed, UniProtKB/TrEMBL Q7X9H6 (Q7X9H6_ARATH)

Last modified June 16, 2009. Version 36. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
MADS-box protein AGL79 EMBL AAN52802.1

Gene names

Ordered Locus Names:

At3g30260 TAIR At3g30260

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	249 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subcellular location

Nucleus By similarity. RuleBase RU000476V3

Sequence similarities

Contains 1 K-box domain. Spearmint SPM002487

Contains 1 MADS-box domain. RuleBase RU000476V3 Spearmint SPM002487

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000476V3 Spearmint SPM002487
Cellular component	Nucleus RuleBase RU000476V3 Spearmint SPM002487
Ligand	DNA-binding RuleBase RU000476V3 Spearmint SPM002487
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: IntAct sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
CAM1	P25854	1	EBI-1238497,EBI-1235664
CAM6	Q03509	1	EBI-1238497,EBI-1236097
CAM7	P59220	1	EBI-1238497,EBI-1236031
CML10	P30187	1	EBI-1238497,EBI-1238722
CML9	Q9S744	1	EBI-1238497,EBI-1236048

Sequences

Sequence

Length

Mass (Da)

Tools

Q7X9H6-1 [UniParc].

Last modified October 1, 2003. Version 1.
Checksum: 18652A3792C707A0
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249

28,075

        10         20         30         40         50         60 
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG 

        70         80         90        100        110        120 
SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR MIDVLQRSLR HLRGEEVDGL 

       130        140        150        160        170        180 
SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT 

       190        200        210        220        230        240 
QNLSHDLASL ATPPFESPHE LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP 


HWMPQLTGE

References

[1]

"Molecular and Phylogenetic Analyses of the Complete MADS-Box Transcription Factor Family in Arabidopsis: New Openings to the MADS World."
Parenicova L., de Folter S., Kieffer M., Horner D.S., Favalli C., Busscher J., Cook H.E., Ingram R.M., Kater M.M., Davies B., Angenent G.C., Colombo L.
Plant Cell 0:0-0(2003)
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Roots EMBL AAN52802.1.

Cross-references

Sequence databases
	AY141238 mRNA. Translation: AAN52802.1.
IPI	IPI00517180.
RefSeq	NP_189645.2.
UniGene	At.36813
3D structure databases
HSSP	HSSP built from PDB template 1EGW based on UniProtKB Q02078.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q7X9H6. 5 interactions.
Genome annotation databases
GeneID	822726.
KEGG	ath:AT3G30260.
NMPDR	fig\|3702.1.peg.15307.
Organism-specific databases
TAIR	At3g30260.
Phylogenomic databases
OMA	Q7X9H6. RYERSAY.
Family and domain databases
InterPro	IPR002487. TF_Kbox. IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF01486. K-box. 1 hit. PF00319. SRF-TF. 1 hit. [Graphical view]
PRINTS	PR00404. MADSDOMAIN.
SMART	SM00432. MADS. 1 hit. [Graphical view]
PROSITE	PS51297. K_BOX. 1 hit. PS00350. MADS_BOX_1. 1 hit. PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7X9H6_ARATH

Accession

Primary (citable) accession number: Q7X9H6

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	June 16, 2009
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequences · References · Cross-references · Entry information