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Q7WTN6

- Q7WTN6_RHOMR

UniProt

Q7WTN6 - Q7WTN6_RHOMR

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Protein
Submitted name: Xylanase
Gene
N/A
Organism
Rhodothermus marinus (Rhodothermus obamensis)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi219 – 2191Calcium 1; via carbonyl oxygenImported
Metal bindingi221 – 2211Calcium 1Imported
Metal bindingi232 – 2321Calcium 2; via carbonyl oxygenImported
Metal bindingi238 – 2381Calcium 2; via carbonyl oxygenImported
Metal bindingi239 – 2391Calcium 2Imported
Metal bindingi262 – 2621Calcium 1Imported
Metal bindingi265 – 2651Calcium 1; via carbonyl oxygenImported
Metal bindingi370 – 3701Calcium 1Imported

GO - Molecular functioni

  1. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. xylan catabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Keywords - Ligandi

CalciumImported, Metal-bindingImported

Protein family/group databases

CAZyiCBM4. Carbohydrate-Binding Module Family 4.
GH10. Glycoside Hydrolase Family 10.

Names & Taxonomyi

Protein namesi
Submitted name:
XylanaseImported
OrganismiRhodothermus marinus (Rhodothermus obamensis)Imported
Taxonomic identifieri29549 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeRhodothermus

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2Y64X-ray1.40A212-376[»]
2Y6GX-ray1.30A212-376[»]
2Y6HX-ray1.08A212-376[»]
2Y6JX-ray1.70A212-376[»]
2Y6KX-ray1.36A212-376[»]
2Y6LX-ray1.28A212-376[»]
3JXSX-ray1.60A/B/C212-376[»]
ProteinModelPortaliQ7WTN6.
SMRiQ7WTN6. Positions 40-200, 212-374.

Miscellaneous databases

EvolutionaryTraceiQ7WTN6.

Family & Domainsi

Family and domain databases

Gene3Di2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR026444. Secre_tail.
[Graphical view]
PfamiPF02018. CBM_4_9. 2 hits.
PF00331. Glyco_hydro_10. 1 hit.
[Graphical view]
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
TIGRFAMsiTIGR04183. Por_Secre_tail. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7WTN6-1 [UniParc]FASTAAdd to Basket

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MRTATDLRFL RNAVGNASRS AIFLFLVFSL VGQAWGQTPA NVNGSFESTP    50
AGVVTDLAGG VEGWVLNVGS LVTNPPVFEV VEATDAPHGS KVLAVTVNGA 100
GNNPWDIEAT AFPVNVEPGV TYTYTIWARA EQDGAVVSFT VGNQSYQEYG 150
RLHEQQITTE WQPYTFEFTV SDQETVIRAP IHFGYAANAG NTIYIDALVI 200
MGPEPEPAGP ELVANINGGF ESTPAGVVTD LAEGVEGWDL NVGSSVTNPP 250
VFEVLETSDA PEGNKVLAVT VNGVGNNPWD IEATAFPVNV RPGVTYTYTI 300
WARAEQDGAV VSFTVGNQSF QEYGRLHEQQ ITTEWQPFTF EFTVSDQETV 350
IRAPIHFGYA ANVGNTIYID GLAIVDSVGA WRPVIVEAED GELGSEWAVE 400
TEGNVTYITI TTDYNETTGD ADHPGENRTA TYQVTFPAPG WYDLYARVYV 450
GPETFNDDSF FYADSFGVKD PESPDDWIIA NQLRAAGYTE PDEYVTGLGA 500
AGSEVWKWIN LSENSFNDVP SDSFYVSPES LTVTFMIGAR ENGLRIDKLA 550
FGRSDLLYTV ADLDTGGPGS PEPEEPPVVL PERPLAADVD KFLGNIYSPS 600
QVENFEYYWN CVTPENAGKW GSVEGTRDQM NWSSLDAAYA LARDNGFCFN 650
FHVLLWGAQQ PAWISELSPE EQLEEIQEWF QAVAERYSFT ASPFDVVQVV 700
NEPLHQPPDG QEGRANYIEA LGGAGETGWD WVITAFELAR QIFPEGTRLM 750
INDYGILSSL ETAQQYLELI QLLKERNLID VIGVQGHAFS TRSGAPIQEV 800
LDLLATTGLP IQVTEMDIDG NPNQSPFVTR EQSEQNQLRD MQRIFPTVWY 850
HPAVEGVTFW GWRPGLWRND YEAYLVYSNG AERPAMVWLR EFMEAYRESY 900
LSANEPEGTL PEELSVVSWP NPSRGQVRFR YALPFEAEVR LQVFDVLGRE 950
VMTLASGRHR AGVYEVAFDG RHLPSGLYLY RLEANGRVRS GRLVLMR 997
Length:997
Mass (Da):110,343
Last modified:October 1, 2003 - v1
Checksum:iCE6ABF99CC4AC1A9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Y11564 Genomic DNA. Translation: CAA72323.2.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Y11564 Genomic DNA. Translation: CAA72323.2 .

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2Y64 X-ray 1.40 A 212-376 [» ]
2Y6G X-ray 1.30 A 212-376 [» ]
2Y6H X-ray 1.08 A 212-376 [» ]
2Y6J X-ray 1.70 A 212-376 [» ]
2Y6K X-ray 1.36 A 212-376 [» ]
2Y6L X-ray 1.28 A 212-376 [» ]
3JXS X-ray 1.60 A/B/C 212-376 [» ]
ProteinModelPortali Q7WTN6.
SMRi Q7WTN6. Positions 40-200, 212-374.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi CBM4. Carbohydrate-Binding Module Family 4.
GH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Miscellaneous databases

EvolutionaryTracei Q7WTN6.

Family and domain databases

Gene3Di 2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProi IPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR026444. Secre_tail.
[Graphical view ]
Pfami PF02018. CBM_4_9. 2 hits.
PF00331. Glyco_hydro_10. 1 hit.
[Graphical view ]
SMARTi SM00633. Glyco_10. 1 hit.
[Graphical view ]
SUPFAMi SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
TIGRFAMsi TIGR04183. Por_Secre_tail. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Cloning and sequence of a thermostable multidomain xylanase from the bacterium Rhodothermus marinus."
    Nordberg Karlsson E., Bartonek-Roxa E., Holst O.
    Biochim. Biophys. Acta 1353:118-124(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Nordberg Karlsson E.M.
    Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "The crystal structure of XG-34, an evolved xyloglucan-specific carbohydrate-binding module."
    Gullfot F., Tan T.C., von Schantz L., Karlsson E.N., Ohlin M., Brumer H., Divne C.
    Proteins 78:785-789(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 212-376 IN COMPLEX WITH CALCIUM.
  4. "Structural basis for carbohydrate-binding specificity--a comparative assessment of two engineered carbohydrate-binding modules."
    von Schantz L., Hakansson M., Logan D.T., Walse B., Osterlin J., Nordberg-Karlsson E., Ohlin M.
    Glycobiology 22:948-961(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.08 ANGSTROMS) OF 212-376 IN COMPLEX WITH CALCIUM.
  5. "Xyloglucan Recognition Through Ch-Pi Interactions and Polar Interactions with Branching Xyloses."
    Schantz L., Hakansson M., Logan D.T., Nordberg-Karlsson E., Ohlin M.
    Submitted (APR-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.00 ANGSTROMS) OF 212-376 IN COMPLEX WITH CALCIUM.

Entry informationi

Entry nameiQ7WTN6_RHOMR
AccessioniPrimary (citable) accession number: Q7WTN6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: September 3, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3

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