Q7WIK6 (Q7WIK6_BORBR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA-ligase EMBL CAE33337.1

Gene names

Ordered Locus Names:

BB2845

Organism

Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus) [Complete proteome] [HAMAP]

Taxonomic identifier

257310 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella › Bordetella bronchiseptica

Protein attributes

Sequence length	820 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CAE33337.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7WIK6 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: 0C8F9F24C950D91F	FASTA	820	90,008
	10 20 30 40 50 60 MTQPLRQYRE KRDFRATAEP AGAARRPRAA ARASEGLSFV IQRHQARRLH YDFRLEIDGV 70 80 90 100 110 120 LVSWAVPKGP SRDPSVKRLA VHVEDHPLEY GGFSGDIPKG QYGAGHVDIW DSGVWIPRGD 130 140 150 160 170 180 PRQGLRRGKL HFALRGRRLA GDWVLVRMSG EQDQWLLRKE DDEAAVPGDD AERAPATPPP 190 200 210 220 230 240 APEHAPAATP RGRRAAMPHT LAPQLATLVD SPPHGPGWSY EVKYDGYRIL AACSAGGVRL 250 260 270 280 290 300 VSRGNEDWQA RMAPLARALG ALKLGRGWLD GEVVVLDERG VADFQLLQNA LDGQAEGLVF 310 320 330 340 350 360 VAFDLPFWNG EDLRALPLQA RQERLEDLLR EVPEDAPLML TQRLPVADDT EGKAAWNEAC 370 380 390 400 410 420 RLSLEGLICK RLDAPYRSGR SQGWLKLKCR PRQEFVIGGY TEPAGARRHL GALLVGLRQG 430 440 450 460 470 480 RQLRYAGRVG TGFGAATLRT LGQRLAALRQ DAKPFSGDVP RGRGDAAIHW VSPELVAEVN 490 500 510 520 530 540 YAGITRDGLL RQASFAGLRA DKPASEVRGE VAARPPAAKA ATPSRRAGDG RAEVAGVRIS 550 560 570 580 590 600 HPDRLAYREP DYTKLQLAEY YAAIGPHILP HLRQRRVALL RCPDGAGTTC FFQKHLSQSL 610 620 630 640 650 660 PAGVRRDGGH LVIESLPGLI ALVQYGAIEF HTWGADTRHP DTPDRITLDL DPGPGVAWPA 670 680 690 700 710 720 IVEGAQMARL LMQEVGLEPF LKTTGGKGLH LVAPLRPTQP WDTVKDFARA LARQLAVALP 730 740 750 760 770 780 DRFTANMAKA RRERRIFVDY LRNGNGATAV AAFSARARDG APVSMPLSWD ALDAGDDLRG 790 800 810 820 ARWNIANALE QARRKPDPWA DYAASRRTLG SRMQARLPRD

References

[1]

"Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica." Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S. , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J. Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-588 / NCTC 13252 / RB50.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX640445 Genomic DNA. Translation: CAE33337.1.
RefSeq	NP_889381.1. NC_002927.3.
3D structure databases
ProteinModelPortal	Q7WIK6.
ModBase	Search...
Protein-protein interaction databases
STRING	257310.BB2845.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE33337; CAE33337; BB2845.
GeneID	2662930.
KEGG	bbr:BB2845.
PATRIC	21139031. VBIBorBro124907_2884.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	BBRO257310:BB2845-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7WIK6_BORBR

Accession

Primary (citable) accession number: Q7WIK6

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	May 1, 2013
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)