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Q7WIK6

- Q7WIK6_BORBR

UniProt

Q7WIK6 - Q7WIK6_BORBR

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Protein
Submitted name:

Putative ATP-dependent DNA-ligase

Gene

BB2845

Organism
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBBRO257310:BB2845-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA-ligaseImported
Gene namesi
Ordered Locus Names:BB2845Imported
OrganismiBordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)Imported
Taxonomic identifieri257310 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
ProteomesiUP000001027: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi257310.BB2845.

Structurei

3D structure databases

ProteinModelPortaliQ7WIK6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7WIK6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTQPLRQYRE KRDFRATAEP AGAARRPRAA ARASEGLSFV IQRHQARRLH
60 70 80 90 100
YDFRLEIDGV LVSWAVPKGP SRDPSVKRLA VHVEDHPLEY GGFSGDIPKG
110 120 130 140 150
QYGAGHVDIW DSGVWIPRGD PRQGLRRGKL HFALRGRRLA GDWVLVRMSG
160 170 180 190 200
EQDQWLLRKE DDEAAVPGDD AERAPATPPP APEHAPAATP RGRRAAMPHT
210 220 230 240 250
LAPQLATLVD SPPHGPGWSY EVKYDGYRIL AACSAGGVRL VSRGNEDWQA
260 270 280 290 300
RMAPLARALG ALKLGRGWLD GEVVVLDERG VADFQLLQNA LDGQAEGLVF
310 320 330 340 350
VAFDLPFWNG EDLRALPLQA RQERLEDLLR EVPEDAPLML TQRLPVADDT
360 370 380 390 400
EGKAAWNEAC RLSLEGLICK RLDAPYRSGR SQGWLKLKCR PRQEFVIGGY
410 420 430 440 450
TEPAGARRHL GALLVGLRQG RQLRYAGRVG TGFGAATLRT LGQRLAALRQ
460 470 480 490 500
DAKPFSGDVP RGRGDAAIHW VSPELVAEVN YAGITRDGLL RQASFAGLRA
510 520 530 540 550
DKPASEVRGE VAARPPAAKA ATPSRRAGDG RAEVAGVRIS HPDRLAYREP
560 570 580 590 600
DYTKLQLAEY YAAIGPHILP HLRQRRVALL RCPDGAGTTC FFQKHLSQSL
610 620 630 640 650
PAGVRRDGGH LVIESLPGLI ALVQYGAIEF HTWGADTRHP DTPDRITLDL
660 670 680 690 700
DPGPGVAWPA IVEGAQMARL LMQEVGLEPF LKTTGGKGLH LVAPLRPTQP
710 720 730 740 750
WDTVKDFARA LARQLAVALP DRFTANMAKA RRERRIFVDY LRNGNGATAV
760 770 780 790 800
AAFSARARDG APVSMPLSWD ALDAGDDLRG ARWNIANALE QARRKPDPWA
810 820
DYAASRRTLG SRMQARLPRD
Length:820
Mass (Da):90,008
Last modified:October 1, 2003 - v1
Checksum:i0C8F9F24C950D91F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX640445 Genomic DNA. Translation: CAE33337.1.
RefSeqiNP_889381.1. NC_002927.3.
WP_010926656.1. NC_002927.3.

Genome annotation databases

EnsemblBacteriaiCAE33337; CAE33337; BB2845.
GeneIDi2662930.
KEGGibbr:BB2845.
PATRICi21139031. VBIBorBro124907_2884.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX640445 Genomic DNA. Translation: CAE33337.1 .
RefSeqi NP_889381.1. NC_002927.3.
WP_010926656.1. NC_002927.3.

3D structure databases

ProteinModelPortali Q7WIK6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257310.BB2845.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE33337 ; CAE33337 ; BB2845 .
GeneIDi 2662930.
KEGGi bbr:BB2845.
PATRICi 21139031. VBIBorBro124907_2884.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BBRO257310:BB2845-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-588 / NCTC 13252 / RB50Imported.

Entry informationi

Entry nameiQ7WIK6_BORBR
AccessioniPrimary (citable) accession number: Q7WIK6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: October 1, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3