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Protein
Submitted name:

Putative ATP-dependent DNA-ligase

Gene

BB2845

Organism
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBBRO257310:BB2845-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA-ligaseImported
Gene namesi
Ordered Locus Names:BB2845Imported
OrganismiBordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)Imported
Taxonomic identifieri257310 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
ProteomesiUP000001027 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi257310.BB2845.

Structurei

3D structure databases

ProteinModelPortaliQ7WIK6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7WIK6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQPLRQYRE KRDFRATAEP AGAARRPRAA ARASEGLSFV IQRHQARRLH
60 70 80 90 100
YDFRLEIDGV LVSWAVPKGP SRDPSVKRLA VHVEDHPLEY GGFSGDIPKG
110 120 130 140 150
QYGAGHVDIW DSGVWIPRGD PRQGLRRGKL HFALRGRRLA GDWVLVRMSG
160 170 180 190 200
EQDQWLLRKE DDEAAVPGDD AERAPATPPP APEHAPAATP RGRRAAMPHT
210 220 230 240 250
LAPQLATLVD SPPHGPGWSY EVKYDGYRIL AACSAGGVRL VSRGNEDWQA
260 270 280 290 300
RMAPLARALG ALKLGRGWLD GEVVVLDERG VADFQLLQNA LDGQAEGLVF
310 320 330 340 350
VAFDLPFWNG EDLRALPLQA RQERLEDLLR EVPEDAPLML TQRLPVADDT
360 370 380 390 400
EGKAAWNEAC RLSLEGLICK RLDAPYRSGR SQGWLKLKCR PRQEFVIGGY
410 420 430 440 450
TEPAGARRHL GALLVGLRQG RQLRYAGRVG TGFGAATLRT LGQRLAALRQ
460 470 480 490 500
DAKPFSGDVP RGRGDAAIHW VSPELVAEVN YAGITRDGLL RQASFAGLRA
510 520 530 540 550
DKPASEVRGE VAARPPAAKA ATPSRRAGDG RAEVAGVRIS HPDRLAYREP
560 570 580 590 600
DYTKLQLAEY YAAIGPHILP HLRQRRVALL RCPDGAGTTC FFQKHLSQSL
610 620 630 640 650
PAGVRRDGGH LVIESLPGLI ALVQYGAIEF HTWGADTRHP DTPDRITLDL
660 670 680 690 700
DPGPGVAWPA IVEGAQMARL LMQEVGLEPF LKTTGGKGLH LVAPLRPTQP
710 720 730 740 750
WDTVKDFARA LARQLAVALP DRFTANMAKA RRERRIFVDY LRNGNGATAV
760 770 780 790 800
AAFSARARDG APVSMPLSWD ALDAGDDLRG ARWNIANALE QARRKPDPWA
810 820
DYAASRRTLG SRMQARLPRD
Length:820
Mass (Da):90,008
Last modified:October 1, 2003 - v1
Checksum:i0C8F9F24C950D91F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX640445 Genomic DNA. Translation: CAE33337.1.
RefSeqiNP_889381.1. NC_002927.3.

Genome annotation databases

EnsemblBacteriaiCAE33337; CAE33337; BB2845.
KEGGibbr:BB2845.
PATRICi21139031. VBIBorBro124907_2884.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX640445 Genomic DNA. Translation: CAE33337.1.
RefSeqiNP_889381.1. NC_002927.3.

3D structure databases

ProteinModelPortaliQ7WIK6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257310.BB2845.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE33337; CAE33337; BB2845.
KEGGibbr:BB2845.
PATRICi21139031. VBIBorBro124907_2884.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBBRO257310:BB2845-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., Holden M.T., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-588 / NCTC 13252 / RB50Imported.

Entry informationi

Entry nameiQ7WIK6_BORBR
AccessioniPrimary (citable) accession number: Q7WIK6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: April 1, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.