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Q7WIK6

- Q7WIK6_BORBR

UniProt

Q7WIK6 - Q7WIK6_BORBR

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Protein
Submitted name: Putative ATP-dependent DNA-ligase
Gene
BB2845
Organism
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBBRO257310:BB2845-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA-ligaseImported
Gene namesi
Ordered Locus Names:BB2845Imported
OrganismiBordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus)
Taxonomic identifieri257310 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
ProteomesiUP000001027: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi257310.BB2845.

Structurei

3D structure databases

ProteinModelPortaliQ7WIK6.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7WIK6-1 [UniParc]FASTAAdd to Basket

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MTQPLRQYRE KRDFRATAEP AGAARRPRAA ARASEGLSFV IQRHQARRLH    50
YDFRLEIDGV LVSWAVPKGP SRDPSVKRLA VHVEDHPLEY GGFSGDIPKG 100
QYGAGHVDIW DSGVWIPRGD PRQGLRRGKL HFALRGRRLA GDWVLVRMSG 150
EQDQWLLRKE DDEAAVPGDD AERAPATPPP APEHAPAATP RGRRAAMPHT 200
LAPQLATLVD SPPHGPGWSY EVKYDGYRIL AACSAGGVRL VSRGNEDWQA 250
RMAPLARALG ALKLGRGWLD GEVVVLDERG VADFQLLQNA LDGQAEGLVF 300
VAFDLPFWNG EDLRALPLQA RQERLEDLLR EVPEDAPLML TQRLPVADDT 350
EGKAAWNEAC RLSLEGLICK RLDAPYRSGR SQGWLKLKCR PRQEFVIGGY 400
TEPAGARRHL GALLVGLRQG RQLRYAGRVG TGFGAATLRT LGQRLAALRQ 450
DAKPFSGDVP RGRGDAAIHW VSPELVAEVN YAGITRDGLL RQASFAGLRA 500
DKPASEVRGE VAARPPAAKA ATPSRRAGDG RAEVAGVRIS HPDRLAYREP 550
DYTKLQLAEY YAAIGPHILP HLRQRRVALL RCPDGAGTTC FFQKHLSQSL 600
PAGVRRDGGH LVIESLPGLI ALVQYGAIEF HTWGADTRHP DTPDRITLDL 650
DPGPGVAWPA IVEGAQMARL LMQEVGLEPF LKTTGGKGLH LVAPLRPTQP 700
WDTVKDFARA LARQLAVALP DRFTANMAKA RRERRIFVDY LRNGNGATAV 750
AAFSARARDG APVSMPLSWD ALDAGDDLRG ARWNIANALE QARRKPDPWA 800
DYAASRRTLG SRMQARLPRD 820
Length:820
Mass (Da):90,008
Last modified:October 1, 2003 - v1
Checksum:i0C8F9F24C950D91F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX640445 Genomic DNA. Translation: CAE33337.1.
RefSeqiNP_889381.1. NC_002927.3.
WP_010926656.1. NC_002927.3.

Genome annotation databases

EnsemblBacteriaiCAE33337; CAE33337; BB2845.
GeneIDi2662930.
KEGGibbr:BB2845.
PATRICi21139031. VBIBorBro124907_2884.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX640445 Genomic DNA. Translation: CAE33337.1 .
RefSeqi NP_889381.1. NC_002927.3.
WP_010926656.1. NC_002927.3.

3D structure databases

ProteinModelPortali Q7WIK6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257310.BB2845.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE33337 ; CAE33337 ; BB2845 .
GeneIDi 2662930.
KEGGi bbr:BB2845.
PATRICi 21139031. VBIBorBro124907_2884.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BBRO257310:BB2845-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-588 / NCTC 13252 / RB50.

Entry informationi

Entry nameiQ7WIK6_BORBR
AccessioniPrimary (citable) accession number: Q7WIK6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: September 3, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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