Q7WER5 (Q7WER5_BORBR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
LacI family transcriptional regulator EMBL CAE34930.1

Gene names

Ordered Locus Names:

BB4567

Organism

Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (Alcaligenes bronchisepticus) [Complete proteome] [HAMAP]

Taxonomic identifier

257310 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella › Bordetella bronchiseptica

Protein attributes

Sequence length	348 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS001761 RuleBase RU000708
Ligand	DNA-binding SAAS SAAS001761 RuleBase RU000708
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7WER5 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: 2FA8F14909F314FC	FASTA	348	37,712
	10 20 30 40 50 60 MKGKQSPVTL RSLAQQLKVH VSTVSRVLNG TDDDARNAAA PETVERIREL AQQLNYRPNP 70 80 90 100 110 120 HAIGLRTQKT RTVSVLVPQL SDLVVATIYE GIDAAAADSR YLTFVANTGD APPRQRQLGE 130 140 150 160 170 180 MALDRRVEGL IFADARRDDT RFLDEIARRG VPMVLVSRHL GTHCAVTCDD VAGGRMAAEH 190 200 210 220 230 240 LLALGHRDIA VLAGEQYAST GCDRSAGFIA YCREQGVDIP AKWILHGPFD TRAGRLAGEK 250 260 270 280 290 300 LFRSARKPSA VFAVNDFLAI GLMGAVRDRG LRAGHDVAIV GFNDTPLAAE LPISLTTIRS 310 320 330 340 PMHAMGYRSM ELLLERIKGG RPASERLAPQ LMVRASTCPR PGEPSGLA

References

[1]

"Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica." Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S. , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J. Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-588 / NCTC 13252 / RB50.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX640450 Genomic DNA. Translation: CAE34930.1.
RefSeq	NP_891101.1. NC_002927.3.
3D structure databases
HSSP	HSSP built from PDB template 1CJG based on UniProtKB P03023.
ProteinModelPortal	Q7WER5.
ModBase	Search...
Protein-protein interaction databases
STRING	257310.BB4567.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE34930; CAE34930; BB4567.
GeneID	2660986.
KEGG	bbr:BB4567.
PATRIC	21142608. VBIBorBro124907_4649.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000220179.
KO	K02529.
OMA	LMIRRST.
ProtClustDB	CLSK921566.
Enzyme and pathway databases
BioCyc	BBRO257310:BB4567-MONOMER.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010982. Lambda_DNA-bd_dom. IPR000394. RNA_pol_sigma_54. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
Pfam	PF00356. LacI. 1 hit. [Graphical view]
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS50932. HTH_LACI_2. 1 hit. PS00717. SIGMA54_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7WER5_BORBR

Accession

Primary (citable) accession number: Q7WER5

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)