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Reviewed, UniProtKB/Swiss-Prot Q7W5J6 (RNC_BORPA)

Last modified November 3, 2009. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Ribonuclease 3
    EC=3.1.26.3
Alternative name(s):
    Ribonuclease III
      Short name=RNase III
Gene names
Name: rnc
Ordered Locus Names: BPP3295
OrganismBordetella parapertussis [Complete proteome] [HAMAP]
Taxonomic identifier519 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella

Protein attributes

Sequence length256 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs By similarity.

Catalytic activity

Endonucleolytic cleavage to 5'-phosphomonoester. HAMAP MF_00104

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Contains 1 DRBM (double-stranded RNA-binding) domain.

Contains 1 RNase III domain.

Ontologies

Keywords
   Cellular componentCytoplasm
   LigandRNA-binding
   Molecular functionEndonuclease
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processmRNA processing

Inferred from electronic annotation. Source: HAMAP

rRNA catabolic process

Inferred from electronic annotation. Source: InterPro

rRNA processing

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functiondouble-stranded RNA binding

Inferred from electronic annotation. Source: InterPro

ribonuclease III activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 256256Ribonuclease 3 HAMAP MF_00104
PRO_0000228506

Regions

Domain6 – 128123RNase III
Domain155 – 22571DRBM

Sequences

Sequence LengthMass (Da)Tools
Q7W5J6-1 [UniParc].

Last modified October 1, 2003. Version 1.
Checksum: 36B8A148A035A807

FASTA25627,829
        10         20         30         40         50         60 
MTAMSLATLE TRLDHRFGDK ALLEQALTHR SHGARHNERL EFLGDSVLNF VVAAMLFERY 

        70         80         90        100        110        120 
GKLDEGDLSR LRANLVKQAS LADIAQRLDL SQYLRLGEGE LKSGGFRRPS ILADTVEALF 

       130        140        150        160        170        180 
GAVFLDAGFE AARRVIVRQY QPVMAHVDPK TLGKDAKTLL QEFLQGRKLA LPQYTVVATH 

       190        200        210        220        230        240 
GAAHSQQFEV ECAIPALEIK IVAPGASRRA AEQSAAKVAL EAAQAVLPAA RAARKSGKAR 

       250 
KTAQLSLPVA VAQEVK 

« Hide

Cross-references

Sequence databases

BX640433 Genomic DNA. Translation: CAE38580.1.
RefSeqNP_885462.1.

3D structure databases

HSSPHSSP built from PDB template 1JFZ based on UniProtKB O67082.
ModBaseSearch...

Genome annotation databases

GeneID1666150.
GenomeReviewsGene locus BPP3295 in contig BX470249_GR.
KEGGbpa:BPP3295.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ7W5J6.
OMAALTHKSF.

Enzyme and pathway databases

BioCycBPAR257311:BPP3295-MON.
BRENDA3.1.26.3. 263123.

Family and domain databases

HAMAPMF_00104.
[Tree]
InterProIPR001159. Ds-RNA_bd.
IPR014720. dsRNA-bd-like.
IPR000999. RNase_III.
IPR011907. RNase_III_bac.
[Graphical view]
Gene3DG3DSA:3.30.160.20. dsRNA-bd-like. 1 hit.
G3DSA:1.10.1520.10. RNase_III. 1 hit.
PfamPF00035. dsrm. 1 hit.
PF00636. Ribonuclease_3. 1 hit.
[Graphical view]
SMARTSM00358. DSRM. 1 hit.
SM00535. RIBOc. 1 hit.
[Graphical view]
TIGRFAMsTIGR02191. RNaseIII. 1 hit.
PROSITEPS50137. DS_RBD. 1 hit.
PS00517. RNASE_3_1. 1 hit.
PS50142. RNASE_3_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRNC_BORPA
AccessionPrimary (citable) accession number: Q7W5J6
Entry history
Integrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: October 1, 2003
Last modified: November 3, 2009
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents