Q7W5H4 (Q7W5H4_BORPA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Name:	rluC EMBL CAE38602.1
Ordered Locus Names:	BPP3317

Organism

Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) [Complete proteome] [HAMAP]

Taxonomic identifier

257311 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella › Bordetella parapertussis

Protein attributes

Sequence length	321 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 Lyase EMBL CAE38602.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7W5H4 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: 25CF77A252650A09	FASTA	321	35,355
	10 20 30 40 50 60 MSLSAMRKET SPGTTPPAVR MLAIGPEHDG QRIDNFLLRL CKGVPKSHIY KAIRGGEVRV 70 80 90 100 110 120 NKGRISAEYR LVEGDVVRVP PLRLPDPGAA RPVPGAEFPV VYEDDALLVI DKPAGVAVHG 130 140 150 160 170 180 GSGVSFGVIE QLRAARPQAR FLELVHRLDR ETSGLLMLAK KRSALLALHA MLREGKGDKH 190 200 210 220 230 240 YLALVEGDWV NDRQHIRLAL TKWTTQSGER RVRVDQAGQA AHTIVTLRKR FGGYSLVDAE 250 260 270 280 290 300 LRTGRTHQIR VHLASSGFPI VGDDKYGTDE TRAAFARRGF GRMFLHAHQL TLPHPLTGET 310 320 LRLTADLPPA CLKLLKQLET A

References

[1]

"Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica." Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S. , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J. Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 12822 / ATCC BAA-587 / NCTC 13253.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX640433 Genomic DNA. Translation: CAE38602.1.
RefSeq	NP_885484.1. NC_002928.3.
3D structure databases
HSSP	HSSP built from PDB template 1PRZ based on UniProtKB Q8X9F0.
ProteinModelPortal	Q7W5H4.
SMR	Q7W5H4. Positions 99-321.
ModBase	Search...
Protein-protein interaction databases
STRING	257311.BPP3317.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE38602; CAE38602; BPP3317.
GeneID	1667294.
KEGG	bpa:BPP3317.
PATRIC	21150614. VBIBorPar43418_3482.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000275914.
KO	K06179.
OMA	IRNNQTD.
ProtClustDB	CLSK920052.
Enzyme and pathway databases
BioCyc	BPAR257311:BPP3317-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7W5H4_BORPA

Accession

Primary (citable) accession number: Q7W5H4

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	May 1, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)