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Q7VYK0

- GLGB_BORPE

UniProt

Q7VYK0 - GLGB_BORPE

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei412 – 4121NucleophileUniRule annotation
Active sitei465 – 4651Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciBPER257313:BP1328-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:BP1328
OrganismiBordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Taxonomic identifieri257313 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
ProteomesiUP000002676: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7317311,4-alpha-glucan branching enzyme GlgBPRO_0000188687Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi257313.BP1328.

Structurei

3D structure databases

ProteinModelPortaliQ7VYK0.
SMRiQ7VYK0. Positions 130-729.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiHERCPHA.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7VYK0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MMRDSPSIQG TLDAATQHAL LAGRHADPFS VLGPHQAGAH TVVRVLAPGA
60 70 80 90 100
RTVMAVLPGG QRTPLLPMQP GLFENTVPGL QPGAPAAYRL CIEWEGGIQH
110 120 130 140 150
TADPYAFGPV LDAAQLDHCA AGGWRYLAGL LGAHAASVDG CAGTRFALWA
160 170 180 190 200
PNARRVAVVG DFNGWDGRRH AMRLRYPAGV WELFLPDVGP GARYKFQVLG
210 220 230 240 250
ADGHTVLKAD PLARQAEAPP ATASIVPDER PFAWTDKAWM EQRAARQRCD
260 270 280 290 300
APISIYEVHA GSWFDDAGAP RWQNLAARLP EYARSLGFTH IELLPVMAHP
310 320 330 340 350
FGGSWGYQPL GLFAPAAAHG APADFAHFVD RCHEAGLGVI LDWVPAHFPD
360 370 380 390 400
DAHGLARLDG TPLYEHADPR EGRHPDWNTL IYNYGRREVR TFLIASAIHW
410 420 430 440 450
LRHYHVDGLR VDAVASMLYR DYSRPAGQWI PNRHGRRENL EAIDFLRELN
460 470 480 490 500
AAVGVQCPGA ITVAEESTAW PGVTAPVANG GLGFDYKWNM GWMHDTLRYM
510 520 530 540 550
RRDPIHRRHH HHDLSFGMVY AYAERFVLPL SHDEVVHGKG SLLGKMPGER
560 570 580 590 600
AAQLAQLRLY YAFMWAHPGK KLLFMGGEFG QQGEWNHDAM LQWSLLDDPA
610 620 630 640 650
HRGLQRLVAD LNHVYATLPE LHCRDADPSG FAWIVGDDAD NSVLAFARVD
660 670 680 690 700
ASHCLVAVCN FTPVPRPGYR FGVPHAGDWR VRVDTGATRY GGAGGGPPIC
710 720 730
LRSEPIPAHG HPQSLVLDLP GFTALYLRHS E
Length:731
Mass (Da):80,327
Last modified:October 1, 2003 - v1
Checksum:i26C856F51D9681E4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX640415 Genomic DNA. Translation: CAE41621.1.
RefSeqiNP_880086.1. NC_002929.2.

Genome annotation databases

EnsemblBacteriaiCAE41621; CAE41621; BP1328.
GeneIDi2665202.
KEGGibpe:BP1328.
PATRICi21155866. VBIBorPer7866_1429.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX640415 Genomic DNA. Translation: CAE41621.1 .
RefSeqi NP_880086.1. NC_002929.2.

3D structure databases

ProteinModelPortali Q7VYK0.
SMRi Q7VYK0. Positions 130-729.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257313.BP1328.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

DNASUi 2665202.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE41621 ; CAE41621 ; BP1328 .
GeneIDi 2665202.
KEGGi bpe:BP1328.
PATRICi 21155866. VBIBorPer7866_1429.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi HERCPHA.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci BPER257313:BP1328-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tohama I / ATCC BAA-589 / NCTC 13251.

Entry informationi

Entry nameiGLGB_BORPE
AccessioniPrimary (citable) accession number: Q7VYK0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: October 1, 2003
Last modified: October 1, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3