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Protein

Protein ApaG

Gene

apaG

Organism
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBPER257313:BP3267-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein ApaGUniRule annotation
Gene namesi
Name:apaGUniRule annotation
Ordered Locus Names:BP3267
OrganismiBordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Taxonomic identifieri257313 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
Proteomesi
  • UP000002676 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 131131Protein ApaGPRO_0000197940Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257313.BP3267.

Structurei

Secondary structure

1
131
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi13 – 219Combined sources
Helixi23 – 253Combined sources
Helixi28 – 303Combined sources
Beta strandi32 – 4312Combined sources
Beta strandi45 – 473Combined sources
Beta strandi49 – 5911Combined sources
Beta strandi65 – 7511Combined sources
Beta strandi85 – 10925Combined sources
Beta strandi114 – 12512Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XQ4X-ray2.70A/B/C/D1-131[»]
ProteinModelPortaliQ7VU61.
SMRiQ7VU61. Positions 7-129.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ7VU61.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 131125ApaGUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 apaG domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105NWN. Bacteria.
COG2967. LUCA.
HOGENOMiHOG000255805.
KOiK06195.
OMAiGTMRGEY.
OrthoDBiEOG6HQSQ6.

Family and domain databases

Gene3Di2.60.40.1470. 1 hit.
HAMAPiMF_00791. ApaG.
InterProiIPR007474. ApaG_domain.
IPR023065. Uncharacterised_ApaG.
[Graphical view]
PfamiPF04379. DUF525. 1 hit.
[Graphical view]
SUPFAMiSSF110069. SSF110069. 1 hit.
PROSITEiPS51087. APAG. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7VU61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNRERPVKP YDLTVSVTPR YVPEQSDPSQ QQYVFAYTVR ITNTGSHPAQ
60 70 80 90 100
VISRHWIITD GEERVQEVRG LGVVGQQPLL APGETFEYTS GCPLPTPIGT
110 120 130
MRGTYHCVGE NGIPFEVPIA EFLLAMPRTL H
Length:131
Mass (Da):14,610
Last modified:October 1, 2003 - v1
Checksum:iD5AF4B4B9FDEDEE0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX640421 Genomic DNA. Translation: CAE43533.1.
RefSeqiNP_881811.1. NC_002929.2.
WP_010929411.1. NC_002929.2.

Genome annotation databases

EnsemblBacteriaiCAE43533; CAE43533; BP3267.
GeneIDi2667479.
KEGGibpe:BP3267.
PATRICi21160134. VBIBorPer7866_3538.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX640421 Genomic DNA. Translation: CAE43533.1.
RefSeqiNP_881811.1. NC_002929.2.
WP_010929411.1. NC_002929.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XQ4X-ray2.70A/B/C/D1-131[»]
ProteinModelPortaliQ7VU61.
SMRiQ7VU61. Positions 7-129.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257313.BP3267.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE43533; CAE43533; BP3267.
GeneIDi2667479.
KEGGibpe:BP3267.
PATRICi21160134. VBIBorPer7866_3538.

Phylogenomic databases

eggNOGiENOG4105NWN. Bacteria.
COG2967. LUCA.
HOGENOMiHOG000255805.
KOiK06195.
OMAiGTMRGEY.
OrthoDBiEOG6HQSQ6.

Enzyme and pathway databases

BioCyciBPER257313:BP3267-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ7VU61.

Family and domain databases

Gene3Di2.60.40.1470. 1 hit.
HAMAPiMF_00791. ApaG.
InterProiIPR007474. ApaG_domain.
IPR023065. Uncharacterised_ApaG.
[Graphical view]
PfamiPF04379. DUF525. 1 hit.
[Graphical view]
SUPFAMiSSF110069. SSF110069. 1 hit.
PROSITEiPS51087. APAG. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tohama I / ATCC BAA-589 / NCTC 13251.

Entry informationi

Entry nameiAPAG_BORPE
AccessioniPrimary (citable) accession number: Q7VU61
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: October 1, 2003
Last modified: November 11, 2015
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.