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Protein
Submitted name:

Uncharacterized protein

Gene

HD_1797

Organism
Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi412 – 4121MagnesiumCombined sources
Metal bindingi413 – 4131Magnesium; via carbonyl oxygenCombined sources
Metal bindingi414 – 4141MagnesiumCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

MagnesiumCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciHDUC233412:GH5F-1621-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:HD_1797Imported
OrganismiHaemophilus ducreyi (strain 35000HP / ATCC 700724)Imported
Taxonomic identifieri233412 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeHaemophilus
Proteomesi
  • UP000001022 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 3025HelicalSequence analysisAdd
BLAST
Transmembranei59 – 8224HelicalSequence analysisAdd
BLAST
Transmembranei102 – 12221HelicalSequence analysisAdd
BLAST
Transmembranei134 – 15623HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei393 – 3931N6,N6-dimethyllysineCombined sources
Modified residuei396 – 3961N6,N6-dimethyllysineCombined sources
Modified residuei397 – 3971N6,N6-dimethyllysineCombined sources
Modified residuei405 – 4051N6,N6-dimethyllysineCombined sources
Modified residuei407 – 4071N6,N6-dimethyllysineCombined sources
Modified residuei427 – 4271N6,N6-dimethyllysineCombined sources

Interactioni

Protein-protein interaction databases

STRINGi233412.HD1797.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2P4PX-ray1.80A/B347-429[»]
ProteinModelPortaliQ7VKS4.
SMRiQ7VKS4. Positions 347-426.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ7VKS4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini218 – 27962CBSInterPro annotationAdd
BLAST
Domaini284 – 34158CBSInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG4105C37. Bacteria.
COG1253. LUCA.
OMAiQPHSKFL.
OrthoDBiEOG60W7V4.

Family and domain databases

Gene3Di3.30.465.10. 1 hit.
InterProiIPR000644. CBS_dom.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR002550. DUF21.
IPR016166. FAD-bd_2.
IPR005170. Transptr-assoc_dom.
[Graphical view]
PfamiPF00571. CBS. 1 hit.
PF03471. CorC_HlyC. 1 hit.
PF01595. DUF21. 1 hit.
[Graphical view]
SMARTiSM01091. CorC_HlyC. 1 hit.
[Graphical view]
SUPFAMiSSF56176. SSF56176. 1 hit.
PROSITEiPS51371. CBS. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7VKS4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLFEAILII LVLIIISAVI SSSEISLAGA RKLKLHSLAK DGDIRAEKVM
60 70 80 90 100
RLQEQPGRFI TMVQIGLNMV AILGGVVGES AITPYLAKLL AQYSQAEWTE
110 120 130 140 150
STASWLSFAL VTSAFVLLAD LMPKRIAMTY PEQVAVRTIN IMLCLITIFK
160 170 180 190 200
PLVLLFDSIA NLLFRLFGIS TVRQDNMTSE DIVAVVDAGA KAGILKAQEH
210 220 230 240 250
YLIENVFEMQ ERRVTSTMTT RENIIFLDRK DNREQVLATL GEDPYSKVLI
260 270 280 290 300
CDNGLDKILG YIETHDLLTQ YLKNDHVSLV DSRLLRKPVF IPDTLSLYEV
310 320 330 340 350
LELFKSAGED FAVIVNEYAL VVGILTINDV MSIVMGELVS TEEEQIMRRN
360 370 380 390 400
EDSWLIDGAT PLEDVMRALN IHTFPRDENY ETIGGFMMYM LRKIPKKTDF
410 420
VLYDKYKFEI IDTENFRIDQ LMVSFRKDV
Length:429
Mass (Da):48,588
Last modified:October 1, 2003 - v1
Checksum:i95174D049492AF46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017143 Genomic DNA. Translation: AAP96548.1.
RefSeqiWP_010945577.1. NC_002940.2.

Genome annotation databases

EnsemblBacteriaiAAP96548; AAP96548; HD_1797.
GeneIDi24944190.
KEGGihdu:HD_1797.
PATRICi20179766. VBIHaeDuc133973_1510.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017143 Genomic DNA. Translation: AAP96548.1.
RefSeqiWP_010945577.1. NC_002940.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2P4PX-ray1.80A/B347-429[»]
ProteinModelPortaliQ7VKS4.
SMRiQ7VKS4. Positions 347-426.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi233412.HD1797.

Protocols and materials databases

DNASUi1491645.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAP96548; AAP96548; HD_1797.
GeneIDi24944190.
KEGGihdu:HD_1797.
PATRICi20179766. VBIHaeDuc133973_1510.

Phylogenomic databases

eggNOGiENOG4105C37. Bacteria.
COG1253. LUCA.
OMAiQPHSKFL.
OrthoDBiEOG60W7V4.

Enzyme and pathway databases

BioCyciHDUC233412:GH5F-1621-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ7VKS4.

Family and domain databases

Gene3Di3.30.465.10. 1 hit.
InterProiIPR000644. CBS_dom.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR002550. DUF21.
IPR016166. FAD-bd_2.
IPR005170. Transptr-assoc_dom.
[Graphical view]
PfamiPF00571. CBS. 1 hit.
PF03471. CorC_HlyC. 1 hit.
PF01595. DUF21. 1 hit.
[Graphical view]
SMARTiSM01091. CorC_HlyC. 1 hit.
[Graphical view]
SUPFAMiSSF56176. SSF56176. 1 hit.
PROSITEiPS51371. CBS. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete genome sequence of Haemophilus ducreyi."
    Munson R.S. Jr., Ray W.C., Mahairas G., Sabo P., Mungur R., Johnson L., Nguyen D., Wang J., Forst C., Hood L.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 35000HP / ATCC 700724Imported.
  2. "The structure of a CorC_HlyC domain from Haemophilus ducreyi."
    Cuff M.E., Volkart L., Moy S., Joachimiak A.
    Submitted (MAR-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 347-429 IN COMPLEX WITH MAGNESIUM, METHYLATION AT LYS-393; LYS-396; LYS-397; LYS-405; LYS-407 AND LYS-427.

Entry informationi

Entry nameiQ7VKS4_HAEDU
AccessioniPrimary (citable) accession number: Q7VKS4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.