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Q7VDV0

- SYI_PROMA

UniProt

Q7VDV0 - SYI_PROMA

Protein

Isoleucine--tRNA ligase

Gene

ileS

Organism
Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (01 Oct 2003)
      Previous versions | rss
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    Functioni

    Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).UniRule annotation

    Catalytic activityi

    ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile).UniRule annotation

    Cofactori

    Binds 1 zinc ion per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei584 – 5841Aminoacyl-adenylateUniRule annotation
    Binding sitei628 – 6281ATPUniRule annotation
    Metal bindingi938 – 9381ZincUniRule annotation
    Metal bindingi941 – 9411ZincUniRule annotation
    Metal bindingi958 – 9581ZincUniRule annotation
    Metal bindingi961 – 9611ZincUniRule annotation

    GO - Molecular functioni

    1. aminoacyl-tRNA editing activity Source: InterPro
    2. ATP binding Source: UniProtKB-HAMAP
    3. isoleucine-tRNA ligase activity Source: UniProtKB-HAMAP
    4. zinc ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. isoleucyl-tRNA aminoacylation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Metal-binding, Nucleotide-binding, Zinc

    Enzyme and pathway databases

    BioCyciPMAR167539:GJN2-272-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Isoleucine--tRNA ligaseUniRule annotation (EC:6.1.1.5UniRule annotation)
    Alternative name(s):
    Isoleucyl-tRNA synthetaseUniRule annotation
    Short name:
    IleRSUniRule annotation
    Gene namesi
    Name:ileSUniRule annotation
    Ordered Locus Names:Pro_0268
    OrganismiProchlorococcus marinus (strain SARG / CCMP1375 / SS120)
    Taxonomic identifieri167539 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaProchloralesProchlorococcaceaeProchlorococcus
    ProteomesiUP000001420: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 969969Isoleucine--tRNA ligasePRO_0000098439Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi167539.Pro0268.

    Structurei

    3D structure databases

    ProteinModelPortaliQ7VDV0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi68 – 7811"HIGH" regionAdd
    BLAST
    Motifi625 – 6295"KMSKS" region

    Domaini

    IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).UniRule annotation

    Sequence similaritiesi

    Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0060.
    KOiK01870.
    OMAiKPVHWCL.
    OrthoDBiEOG644ZM1.

    Family and domain databases

    Gene3Di1.10.730.10. 1 hit.
    3.40.50.620. 2 hits.
    3.90.740.10. 1 hit.
    HAMAPiMF_02002. Ile_tRNA_synth_type1.
    InterProiIPR001412. aa-tRNA-synth_I_CS.
    IPR002300. aa-tRNA-synth_Ia.
    IPR002301. Ile-tRNA-ligase.
    IPR023585. Ile-tRNA-ligase_type1.
    IPR014729. Rossmann-like_a/b/a_fold.
    IPR009080. tRNAsynth_1a_anticodon-bd.
    IPR013155. V/L/I-tRNA-synth_anticodon-bd.
    IPR009008. Val/Leu/Ile-tRNA-synth_edit.
    IPR010663. Znf_DNA_glyclase/IsotRNA_synth.
    [Graphical view]
    PANTHERiPTHR11946:SF9. PTHR11946:SF9. 1 hit.
    PfamiPF08264. Anticodon_1. 1 hit.
    PF00133. tRNA-synt_1. 1 hit.
    PF06827. zf-FPG_IleRS. 1 hit.
    [Graphical view]
    PRINTSiPR00984. TRNASYNTHILE.
    SUPFAMiSSF47323. SSF47323. 1 hit.
    SSF50677. SSF50677. 1 hit.
    TIGRFAMsiTIGR00392. ileS. 1 hit.
    PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q7VDV0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNHEKTNDGN NRPSYKESLN LLKTSFSMRA NAIVREPELQ QFWKEKGIDF    50
    ELGLANKGST FTLHDGPPYA NGNLHMGHAL NKILKDIINK YQILKGSKVR 100
    FVPGWDCHGL PIELQVLKTL DRKEREDLTP IKLRKKAAAY AHKQIALQKD 150
    GFRRWGIWAD WDNPYLTLQK EYEAAQIKLF GEMAFKGYIY RGLKPVHWSP 200
    SSRTALAEAE LEYPEGHTSP SIYVAFSVVK LPNLLQESLS KQGLALPVHE 250
    DGLSNKLKVA IWTTTPWTLP ANMAVAVNEN IDYIIAKDNS EKLLIIASDL 300
    REIVSEEIGS PLEKVAIVKG KMLDGVLYKH PLFDSLNPFV LGGNYITTES 350
    GTGIVHTAPG HGVDDFNTGM KYKLPIICPV DEKGFFTSEA GDFEGLNVLK 400
    DANTKIINAL KESGCLLKEK PYIHKYPYDW RTKKPTIFRA TEQWFASVEG 450
    FRNDALNSIE KVEWLPQSGK KRIKSMVEDR GDWCISRQRN WGVPIPVFYS 500
    KEGSKVLLNE ATIKHIYNLF VKYGADAWWE LPISELLPSN YSSEAHKWEK 550
    GKDTMDVWFD SGSSWTSVIS KSDELNYPAD LYLEGSDQHR GWFQSSLLTS 600
    VAVNSHAPYL KVLTHGFALD ENGRKMSKSL GNIIDPWKII NGGNNKKLEP 650
    AYGADVLRLW VSSVDYSVDV PIGNNILSQL SDVYRKVRNT ARYLLGNLHD 700
    FDPAKDGLDI GDLPILDRWM LNRTADVVDE ISIAFERYEF SKFFQLLQSF 750
    CVVDLSNFYL DIAKDRLYVS APNDFRRRSC QYVLSLIVER LAGVISPVLS 800
    HTAEDIWQNI PYKLNEESVF QRYWPKVPDS WRDSSFNKPI NQIRELRTSV 850
    NRALEDCRTR QELGSSLEAS VRISPINESL QNSLTFLQEN GHNSVDNLFD 900
    WLIVSKVQIG GEPWAEVLFT KEDDIGVIEI AKSRGAKCER CWHYELDIGQ 950
    YERHPLLCGR CVDIIERID 969
    Length:969
    Mass (Da):110,344
    Last modified:October 1, 2003 - v1
    Checksum:i7D21237B13D0CB44
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017126 Genomic DNA. Translation: AAP99314.1.
    RefSeqiNP_874662.1. NC_005042.1.
    WP_011124423.1. NC_005042.1.

    Genome annotation databases

    EnsemblBacteriaiAAP99314; AAP99314; Pro_0268.
    GeneIDi1461647.
    KEGGipma:Pro_0268.
    PATRICi23027127. VBIProMar8617_0276.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017126 Genomic DNA. Translation: AAP99314.1 .
    RefSeqi NP_874662.1. NC_005042.1.
    WP_011124423.1. NC_005042.1.

    3D structure databases

    ProteinModelPortali Q7VDV0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 167539.Pro0268.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAP99314 ; AAP99314 ; Pro_0268 .
    GeneIDi 1461647.
    KEGGi pma:Pro_0268.
    PATRICi 23027127. VBIProMar8617_0276.

    Phylogenomic databases

    eggNOGi COG0060.
    KOi K01870.
    OMAi KPVHWCL.
    OrthoDBi EOG644ZM1.

    Enzyme and pathway databases

    BioCyci PMAR167539:GJN2-272-MONOMER.

    Family and domain databases

    Gene3Di 1.10.730.10. 1 hit.
    3.40.50.620. 2 hits.
    3.90.740.10. 1 hit.
    HAMAPi MF_02002. Ile_tRNA_synth_type1.
    InterProi IPR001412. aa-tRNA-synth_I_CS.
    IPR002300. aa-tRNA-synth_Ia.
    IPR002301. Ile-tRNA-ligase.
    IPR023585. Ile-tRNA-ligase_type1.
    IPR014729. Rossmann-like_a/b/a_fold.
    IPR009080. tRNAsynth_1a_anticodon-bd.
    IPR013155. V/L/I-tRNA-synth_anticodon-bd.
    IPR009008. Val/Leu/Ile-tRNA-synth_edit.
    IPR010663. Znf_DNA_glyclase/IsotRNA_synth.
    [Graphical view ]
    PANTHERi PTHR11946:SF9. PTHR11946:SF9. 1 hit.
    Pfami PF08264. Anticodon_1. 1 hit.
    PF00133. tRNA-synt_1. 1 hit.
    PF06827. zf-FPG_IleRS. 1 hit.
    [Graphical view ]
    PRINTSi PR00984. TRNASYNTHILE.
    SUPFAMi SSF47323. SSF47323. 1 hit.
    SSF50677. SSF50677. 1 hit.
    TIGRFAMsi TIGR00392. ileS. 1 hit.
    PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SARG / CCMP1375 / SS120.

    Entry informationi

    Entry nameiSYI_PROMA
    AccessioniPrimary (citable) accession number: Q7VDV0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 20, 2005
    Last sequence update: October 1, 2003
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3