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Q7VBZ4 (Q7VBZ4_PROMA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197
Gene names
Name:dapF HAMAP MF_00197 EMBL AAP99992.1
Ordered Locus Names:Pro_0948
OrganismProchlorococcus marinus (strain SARG / CCMP1375 / SS120)
Taxonomic identifier167539 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Prochlorophytes › Prochlorococcaceae › Prochlorococcus

Protein attributes

Sequence length285 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197 SAAS SAAS018510

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197 SAAS SAAS018510

Subcellular location

Cytoplasm By similarity HAMAP MF_00197 SAAS SAAS018510.

Sequence similarities

Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site801 By similarity HAMAP MF_00197
Active site2281 By similarity HAMAP MF_00197

Sequences

Sequence LengthMass (Da)Tools
Q7VBZ4 [UniParc].

Last modified October 1, 2003. Version 1.
Checksum: 769A2B01E9CD25FC

FASTA28531,414
        10         20         30         40         50         60 
MQIIKFNKYQ GLGNDFIIID DRKDSTVNNI LTNDTSLVRN ICNRKYGVGA DGIILVQNSE 

        70         80         90        100        110        120 
RGANTKMQIF NSDGSIAEMC GNGIRCLIKY LYNESQLNED INFIIETLAG NLDCYVLNGD 

       130        140        150        160        170        180 
HIRVNMGSPS FEPKAIPTTL SPNNLNIPEG TVTIKNENIT MYGIGMGNPH MVIILKSIED 

       190        200        210        220        230        240 
LQLEELGRNF ETDNRFPNKT NVHFVEVLNM NKILVKVWER GCGATLACGT GACACLAVTS 

       250        260        270        280 
LLGLTNNKSE VVLPGGSLFI DWLNTSDPLY MTGPAEFVFS GQLYI

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References

[1]"Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome."
Dufresne A., Salanoubat M., Partensky F., Artiguenave F., Axmann I.M., Barbe V., Duprat S., Galperin M.Y., Koonin E.V., Le Gall F., Makarova K.S., Ostrowski M., Oztas S., Robert C., Rogozin I.B., Scanlan D.J., Tandeau de Marsac N., Weissenbach J. expand/collapse author list , Wincker P., Wolf Y.I., Hess W.R.
Proc. Natl. Acad. Sci. U.S.A. 100:10020-10025(2003) [PubMed: 12917486] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SARG / CCMP1375 / SS120.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017126 Genomic DNA. Translation: AAP99992.1.
RefSeqNP_875340.1. NC_005042.1.

3D structure databases

HSSPHSSP built from PDB template 1GQZ based on UniProtKB P44859.
ProteinModelPortalQ7VBZ4.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1462330.
GenomeReviewsGene locus Pro_0948 in contig AE017126_GR.
KEGGpma:Pro0948.
PATRIC23028611. VBIProMar8617_0997.

Phylogenomic databases

HOGENOMHBG399442.
OMAFMTGPAT.
ProtClustDBPRK00450.

Enzyme and pathway databases

BioCycPMAR167539:PRO_0948-MONOMER.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
[Tree]
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
KOK01778.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ7VBZ4_PROMA
AccessionPrimary (citable) accession number: Q7VBZ4
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: December 14, 2011
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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