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Protein
Submitted name:

Thermostable DNA ligase

Gene

dnlI

Organism
Rhodopirellula baltica (strain SH1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Thermostable DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:dnlIImported
Ordered Locus Names:RB1571Imported
OrganismiRhodopirellula baltica (strain SH1)Imported
Taxonomic identifieri243090 [NCBI]
Taxonomic lineageiBacteriaPlanctomycetesPlanctomycetiaPlanctomycetalesPlanctomycetaceaeRhodopirellula
ProteomesiUP000001025 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi243090.RB1571.

Structurei

3D structure databases

ProteinModelPortaliQ7UX47.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
InParanoidiQ7UX47.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7UX47-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLFAELFQR LDQTTKTNEK VAAIAQYMSA ASPEDAAWAI ASLSGRRVKR
60 70 80 90 100
LVSTGLLRRL AAESAEIPDW LFEESYDSVG DLAETISLLV PAGNSPDADF
110 120 130 140 150
RSLSDWMQND VLPLARMDES EQSDAVRRMW AQTEGTSRLI LMKLITGSFR
160 170 180 190 200
VGVSSRLVAR GIAESNGLPA DVIAHRLMGD WDPTPDFIER LHSTDLNDAT
210 220 230 240 250
HSRPYPFCLA HALADDANAE GDGPDWQTLG DPSEYQAEWK WDGIRGQVIR
260 270 280 290 300
RAGRTYIWSR GEDLMVNRWP EIERAAEFLP DGTVIDGEIL ASRHVSPALD
310 320 330 340 350
DSKQAIEVLP FAQLQRRIGR KTVGKKLLTE VPVMFHAFDC LELDGNDLRA
360 370 380 390 400
KPLGDRRDAL LKMLSIHQPP SVVWNEPLSF DSWDDLAAIR STSRHALAEG
410 420 430 440 450
VMIKRLDAPY SVGRVRGVWW KWKLAPHTVD AVLIYAQRGH GKRASLYTDY
460 470 480 490 500
TFAVWDEDKL VPFAKAYSGL TDAEIRKVDR FVRDNTSERF GPVRSVKPEL
510 520 530 540 550
VMELAFEGLQ RSTRHKSGIA TRFPRIVRWR TDKQPADADR LADLIAMLPE
560
EESKVIASGS EEVP
Length:564
Mass (Da):63,328
Last modified:October 1, 2003 - v1
Checksum:iC668E51873585F31
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX294135 Genomic DNA. Translation: CAD72165.1.
RefSeqiNP_864484.1. NC_005027.1.
WP_011118433.1. NC_005027.1.

Genome annotation databases

EnsemblBacteriaiCAD72165; CAD72165; RB1571.
GeneIDi1795706.
KEGGirba:RB1571.
PATRICi23242885. VBIRhoBal59814_0732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX294135 Genomic DNA. Translation: CAD72165.1.
RefSeqiNP_864484.1. NC_005027.1.
WP_011118433.1. NC_005027.1.

3D structure databases

ProteinModelPortaliQ7UX47.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243090.RB1571.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAD72165; CAD72165; RB1571.
GeneIDi1795706.
KEGGirba:RB1571.
PATRICi23242885. VBIRhoBal59814_0732.

Phylogenomic databases

HOGENOMiHOG000036007.
InParanoidiQ7UX47.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SH1Imported.

Entry informationi

Entry nameiQ7UX47_RHOBA
AccessioniPrimary (citable) accession number: Q7UX47
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: July 22, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.