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Protein
Submitted name:

Synechococcus sp. WH8102 complete genome; segment 4/7

Gene

SYNW1321

Organism
Synechococcus sp. (strain WH8102)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Synechococcus sp. WH8102 complete genome; segment 4/7Imported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:SYNW1321Imported
OrganismiSynechococcus sp. (strain WH8102)Imported
Taxonomic identifieri84588 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001422 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi84588.SYNW1321.

Structurei

3D structure databases

ProteinModelPortaliQ7U6L7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7U6L7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFQALFDR LDRMNGTNAK VRALAEHFRS TPAADGAWAL QLLLGKRRRR
60 70 80 90 100
LITGRRLRDI LRDRGGLPEW LIADCHGQVG DSAETISLLW PAVKDRIQGQ
110 120 130 140 150
ATDLPSINPE QPLHWWMETL LPAIGALKDD KQADAVIHLW HAVPDERHFI
160 170 180 190 200
VNKLLTGGFR VGVSTGLISR ALATAFELED TLVVQRLMGG FTPSAAAFLA
210 220 230 240 250
LSRPEAPEEQ QSSGVPYPFF LASPLEPERL VETPASDWRV EWKWDGIRGQ
260 270 280 290 300
LIHRGTGVYL WSRGEELVND SFPELVDVAA ALPQGTVLDG EVICWREGDE
310 320 330 340 350
TPLGFDQLQR RLGRKTVGST LKRECPMRFV AYDLLERSGT DIRQRPLHER
360 370 380 390 400
QHQLDDVLNH VDHGEAWRLH RSPSWVLQSW GELDQQRNNA REVRAEGLML
410 420 430 440 450
KNIDSPYLSG RKRGHWWKHK LEPMTLDAVL LYAQAGSGRR ANLFTDYTFG
460 470 480 490 500
LWSDAAEPQL VSFAKAYSGL NDEEILELDR WIRRNTLQRF GPARSVKAEL
510 520 530 540 550
VFEIGFEGIH PSKRHKSGIA VRFPRILRWR RDKPADEADR IQTALSLIRD

QPEASL
Length:556
Mass (Da):63,169
Last modified:October 1, 2003 - v1
Checksum:i03C4D9E9F7479B72
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX569692 Genomic DNA. Translation: CAE07836.1.
RefSeqiNP_897414.1. NC_005070.1.
WP_011128185.1. NC_005070.1.

Genome annotation databases

EnsemblBacteriaiCAE07836; CAE07836; SYNW1321.
KEGGisyw:SYNW1321.
PATRICi23834178. VBISynSp27240_1389.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX569692 Genomic DNA. Translation: CAE07836.1.
RefSeqiNP_897414.1. NC_005070.1.
WP_011128185.1. NC_005070.1.

3D structure databases

ProteinModelPortaliQ7U6L7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi84588.SYNW1321.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE07836; CAE07836; SYNW1321.
KEGGisyw:SYNW1321.
PATRICi23834178. VBISynSp27240_1389.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WH8102Imported.

Entry informationi

Entry nameiQ7U6L7_SYNPX
AccessioniPrimary (citable) accession number: Q7U6L7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: April 29, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.