Q7U6L7 (Q7U6L7_SYNPX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase EMBL CAE07836.1
EC=6.5.1.1 EMBL CAE07836.1

Gene names

Ordered Locus Names:

SYNW1321

Organism

Synechococcus sp. (strain WH8102) [Complete proteome] [HAMAP] EMBL CAE07836.1

Taxonomic identifier

84588 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechococcus

Protein attributes

Sequence length	556 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CAE07836.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7U6L7 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: 03C4D9E9F7479B72	FASTA	556	63,169
	10 20 30 40 50 60 MKAFQALFDR LDRMNGTNAK VRALAEHFRS TPAADGAWAL QLLLGKRRRR LITGRRLRDI 70 80 90 100 110 120 LRDRGGLPEW LIADCHGQVG DSAETISLLW PAVKDRIQGQ ATDLPSINPE QPLHWWMETL 130 140 150 160 170 180 LPAIGALKDD KQADAVIHLW HAVPDERHFI VNKLLTGGFR VGVSTGLISR ALATAFELED 190 200 210 220 230 240 TLVVQRLMGG FTPSAAAFLA LSRPEAPEEQ QSSGVPYPFF LASPLEPERL VETPASDWRV 250 260 270 280 290 300 EWKWDGIRGQ LIHRGTGVYL WSRGEELVND SFPELVDVAA ALPQGTVLDG EVICWREGDE 310 320 330 340 350 360 TPLGFDQLQR RLGRKTVGST LKRECPMRFV AYDLLERSGT DIRQRPLHER QHQLDDVLNH 370 380 390 400 410 420 VDHGEAWRLH RSPSWVLQSW GELDQQRNNA REVRAEGLML KNIDSPYLSG RKRGHWWKHK 430 440 450 460 470 480 LEPMTLDAVL LYAQAGSGRR ANLFTDYTFG LWSDAAEPQL VSFAKAYSGL NDEEILELDR 490 500 510 520 530 540 WIRRNTLQRF GPARSVKAEL VFEIGFEGIH PSKRHKSGIA VRFPRILRWR RDKPADEADR 550 IQTALSLIRD QPEASL

References

[1]

"The genome of a motile marine Synechococcus." Palenik B., Brahamsha B., Larimer F., Land M., Hauser L., Chain P., Lamerdin J., Regala W., Allen E.A., McCarren J., Paulsen I., Dufresne A., Partensky F., Webb E., Waterbury J. Nature 424:1037-1042(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WH8102.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX569692 Genomic DNA. Translation: CAE07836.1.
RefSeq	NP_897414.1. NC_005070.1.
3D structure databases
ProteinModelPortal	Q7U6L7.
ModBase	Search...
Protein-protein interaction databases
STRING	84588.SYNW1321.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE07836; CAE07836; SYNW1321.
GeneID	1730074.
KEGG	syw:SYNW1321.
PATRIC	23834178. VBISynSp27240_1389.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7U6L7_SYNPX

Accession

Primary (citable) accession number: Q7U6L7

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	May 29, 2013
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)