Q7U3K5 (Q7U3K5_SYNPX) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

SYNW2427

Organism

Synechococcus sp. (strain WH8102) [Complete proteome] [HAMAP]

Taxonomic identifier

84588 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	467 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS013325
Molecular function	Sigma factor SAAS SAAS013325 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7U3K5 [UniParc]. Last modified October 1, 2003. Version 1. Checksum: F33D2F41AFD5AF29	FASTA	467	53,212
	10 20 30 40 50 60 MAKGFALQFA EAVDAQQAKH HPKEPVQSIA CAALAVDRGT PRRAVGTAGY SHLAQFEPCV 70 80 90 100 110 120 NRADPEGIQR FCRTDDGCGE PCRQSNCSTP LPRQPRRTGE TRDRRSRSTT DLLRLYLQDI 130 140 150 160 170 180 GRVDLLTNEE EVTLARLVQR REALLQQQRD LATSDAAIGE LYRLEELQRR EANQHSHWPT 190 200 210 220 230 240 KQEWARAAHL SLAELQQRIE AGYGAWAREA NLEARELKTA LRNGRRAKDH MIQANLRLVV 250 260 270 280 290 300 AVAKKYQQRG MELLDLVQEG TLGLERAVEK FDPTRGFRFS TYAYWWIRQG MTRAIATQSR 310 320 330 340 350 360 TIRLPVHVTE KLNRIKRAQQ EIATNEGRIA SIADLARALK LSEDTVRQTL ARVPRSVSLD 370 380 390 400 410 420 TRVGRDQDTQ LGDLIEDGKA TPEQTLTHDE LHNDLEHLLD ELTSREAAVL RRRFGLEDDT 430 440 450 460 PQTLAQIGEA LKLSRERVRQ IETRALLKLR QPQRRSKVRD YIQGLDS

References

[1]

"The genome of a motile marine Synechococcus." Palenik B., Brahamsha B., Larimer F.W., Land M.L., Hauser L., Chain P., Lamerdin J.E., Regala W., Allen E.E., McCarren J., Paulsen I.T., Dufresne A., Partensky F., Webb E.A., Waterbury J. Nature 424:1037-1042(2003) [PubMed: 12917641] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX569695 Genomic DNA. Translation: CAE08942.1.
RefSeq	NP_898516.1. NC_005070.1.
3D structure databases
HSSP	HSSP built from PDB template 1IW7 based on UniProtKB Q9WX78.
ProteinModelPortal	Q7U3K5.
SMR	Q7U3K5. Positions 214-298.
ModBase	Search...
Protein-protein interaction databases
STRING	Q7U3K5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1730578.
GenomeReviews	Gene locus SYNW2427 in contig BX548020_GR.
KEGG	syw:SYNW2427.
PATRIC	23836642. VBISynSp27240_2590.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q7U3K5.
ProtClustDB	CLSK826321.
Enzyme and pathway databases
BioCyc	SSP84588:SYNW2427OR1040-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7U3K5_SYNPX

Accession

Primary (citable) accession number: Q7U3K5

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2003
Last sequence update:	October 1, 2003
Last modified:	December 14, 2011
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)