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Protein

Zinc finger MYND domain-containing protein 19

Gene

Zmynd19

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved as a regulatory molecule in GPR24/MCH-R1 signaling.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri164 – 21249MYND-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger MYND domain-containing protein 19
Alternative name(s):
Melanin-concentrating hormone receptor 1-interacting zinc finger protein
Short name:
MCH-R1-interacting zinc finger protein
Gene namesi
Name:Zmynd19
Synonyms:Mizip
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi735079. Zmynd19.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cytoplasm, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 227227Zinc finger MYND domain-containing protein 19PRO_0000218321Add
BLAST

Proteomic databases

PaxDbiQ7TSV3.

Expressioni

Gene expression databases

GenevisibleiQ7TSV3. RN.

Interactioni

Subunit structurei

Interacts with GPR24/MCH-R1.By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010270.

Structurei

3D structure databases

ProteinModelPortaliQ7TSV3.
SMRiQ7TSV3. Positions 178-213.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi158 – 1614Poly-Glu

Sequence similaritiesi

Contains 1 MYND-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri164 – 21249MYND-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IF0H. Eukaryota.
ENOG410YJQA. LUCA.
GeneTreeiENSGT00390000012479.
HOGENOMiHOG000231532.
HOVERGENiHBG058268.
InParanoidiQ7TSV3.
OMAiESSCTYY.
OrthoDBiEOG7DJSND.
PhylomeDBiQ7TSV3.
TreeFamiTF329209.

Family and domain databases

InterProiIPR003615. HNH_nuc.
IPR032978. ZMYND19.
IPR002893. Znf_MYND.
[Graphical view]
PANTHERiPTHR13244:SF5. PTHR13244:SF5. 1 hit.
PfamiPF13392. HNH_3. 1 hit.
PF01753. zf-MYND. 1 hit.
[Graphical view]
PROSITEiPS01360. ZF_MYND_1. 1 hit.
PS50865. ZF_MYND_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7TSV3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDFKLGIVR LGRVAGKTKY TLIDEQDIPL VESYSFEARM EVDADGNGAK
60 70 80 90 100
IFAYAFDKNR GRGSGRLLHE LLWERHRGGV APGFQVVHLN AVTVDNRLDN
110 120 130 140 150
LQLVPWGWRP KAEETSSKQR EQSLYWLAIQ QLPTDPIEEQ FPVLNVTRYY
160 170 180 190 200
NANGDVVEEE ENSCTYYECH YPPCTVIEKQ LREFNICGRC QVARYCGSQC
210 220
QQKDWPAHKK HCRERKRPFQ HELEPER
Length:227
Mass (Da):26,433
Last modified:October 1, 2003 - v1
Checksum:i906F0B51B670063A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ488144 mRNA. Translation: CAD32374.1.
BC088093 mRNA. Translation: AAH88093.1.
RefSeqiNP_942065.1. NM_198770.2.
UniGeneiRn.40409.

Genome annotation databases

EnsembliENSRNOT00000010270; ENSRNOP00000010270; ENSRNOG00000007752.
GeneIDi311791.
KEGGirno:311791.
UCSCiRGD:735079. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ488144 mRNA. Translation: CAD32374.1.
BC088093 mRNA. Translation: AAH88093.1.
RefSeqiNP_942065.1. NM_198770.2.
UniGeneiRn.40409.

3D structure databases

ProteinModelPortaliQ7TSV3.
SMRiQ7TSV3. Positions 178-213.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010270.

Proteomic databases

PaxDbiQ7TSV3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000010270; ENSRNOP00000010270; ENSRNOG00000007752.
GeneIDi311791.
KEGGirno:311791.
UCSCiRGD:735079. rat.

Organism-specific databases

CTDi116225.
RGDi735079. Zmynd19.

Phylogenomic databases

eggNOGiENOG410IF0H. Eukaryota.
ENOG410YJQA. LUCA.
GeneTreeiENSGT00390000012479.
HOGENOMiHOG000231532.
HOVERGENiHBG058268.
InParanoidiQ7TSV3.
OMAiESSCTYY.
OrthoDBiEOG7DJSND.
PhylomeDBiQ7TSV3.
TreeFamiTF329209.

Miscellaneous databases

PROiQ7TSV3.

Gene expression databases

GenevisibleiQ7TSV3. RN.

Family and domain databases

InterProiIPR003615. HNH_nuc.
IPR032978. ZMYND19.
IPR002893. Znf_MYND.
[Graphical view]
PANTHERiPTHR13244:SF5. PTHR13244:SF5. 1 hit.
PfamiPF13392. HNH_3. 1 hit.
PF01753. zf-MYND. 1 hit.
[Graphical view]
PROSITEiPS01360. ZF_MYND_1. 1 hit.
PS50865. ZF_MYND_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "MIZIP, a highly conserved, vertebrate specific melanin-concentrating hormone receptor 1 interacting zinc-finger protein."
    Baechner D., Kreienkamp H.-J., Richter D.
    FEBS Lett. 526:124-128(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Wistar.
    Tissue: Brain.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Spleen.

Entry informationi

Entry nameiZMY19_RAT
AccessioniPrimary (citable) accession number: Q7TSV3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: October 1, 2003
Last modified: June 8, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.