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Q7TPY9

- LDOC1_MOUSE

UniProt

Q7TPY9 - LDOC1_MOUSE

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Protein

Protein LDOC1

Gene

Ldoc1

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

May have an important role in the development and/or progression of some cancers.By similarity

GO - Biological processi

  1. negative regulation of cell proliferation Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein LDOC1
Gene namesi
Name:Ldoc1
Synonyms:Gm366
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:2685212. Ldoc1.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 151151Protein LDOC1PRO_0000084392Add
BLAST

Proteomic databases

PRIDEiQ7TPY9.

Expressioni

Gene expression databases

BgeeiQ7TPY9.
CleanExiMM_LDOC1.
GenevestigatoriQ7TPY9.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi134 – 15017Asp/Glu-rich (highly acidic)Add
BLAST

Sequence similaritiesi

Belongs to the LDOC1 family.Curated

Phylogenomic databases

eggNOGiNOG46550.
GeneTreeiENSGT00510000047956.
HOGENOMiHOG000049195.
HOVERGENiHBG052318.
InParanoidiQ7TPY9.
OMAiEFIVQTT.
OrthoDBiEOG76HQ3K.
PhylomeDBiQ7TPY9.
TreeFamiTF337843.

Family and domain databases

InterProiIPR029750. LDOC1.
[Graphical view]
PANTHERiPTHR15503:SF3. PTHR15503:SF3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q7TPY9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVEELLSLLH ALLDRHQALC MENHQLLKQL RLLVCERARL LRQVCPPSCP
60 70 80 90 100
VPYPSRFSGE SGRLPEFIMQ TMSYMLANEE HFCNDAMKVA FLISLLSGEA
110 120 130 140 150
EEWVMPYIES NSYVLGDYQA FVDEMKQYFG WGTDDEDDGD DDEEEEMEED

H
Length:151
Mass (Da):17,546
Last modified:October 1, 2003 - v1
Checksum:i6E923EAAD774419D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL672025 Genomic DNA. Translation: CAM20842.1.
BC052689 mRNA. Translation: AAH52689.1.
AK137057 mRNA. Translation: BAE23221.1.
CCDSiCCDS30163.1.
RefSeqiNP_001018097.1. NM_001018087.1.
UniGeneiMm.23468.

Genome annotation databases

EnsembliENSMUST00000075983; ENSMUSP00000075366; ENSMUSG00000057615.
GeneIDi434784.
KEGGimmu:434784.
UCSCiuc009tij.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL672025 Genomic DNA. Translation: CAM20842.1 .
BC052689 mRNA. Translation: AAH52689.1 .
AK137057 mRNA. Translation: BAE23221.1 .
CCDSi CCDS30163.1.
RefSeqi NP_001018097.1. NM_001018087.1.
UniGenei Mm.23468.

3D structure databases

ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q7TPY9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000075983 ; ENSMUSP00000075366 ; ENSMUSG00000057615 .
GeneIDi 434784.
KEGGi mmu:434784.
UCSCi uc009tij.1. mouse.

Organism-specific databases

CTDi 23641.
MGIi MGI:2685212. Ldoc1.

Phylogenomic databases

eggNOGi NOG46550.
GeneTreei ENSGT00510000047956.
HOGENOMi HOG000049195.
HOVERGENi HBG052318.
InParanoidi Q7TPY9.
OMAi EFIVQTT.
OrthoDBi EOG76HQ3K.
PhylomeDBi Q7TPY9.
TreeFami TF337843.

Miscellaneous databases

NextBioi 409851.
PROi Q7TPY9.
SOURCEi Search...

Gene expression databases

Bgeei Q7TPY9.
CleanExi MM_LDOC1.
Genevestigatori Q7TPY9.

Family and domain databases

InterProi IPR029750. LDOC1.
[Graphical view ]
PANTHERi PTHR15503:SF3. PTHR15503:SF3. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Egg.
  3. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo.

Entry informationi

Entry nameiLDOC1_MOUSE
AccessioniPrimary (citable) accession number: Q7TPY9
Secondary accession number(s): B1AV12
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: October 1, 2003
Last modified: October 29, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3