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Q7TPY9

- LDOC1_MOUSE

UniProt

Q7TPY9 - LDOC1_MOUSE

Protein

Protein LDOC1

Gene

Ldoc1

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    May have an important role in the development and/or progression of some cancers.By similarity

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein LDOC1
    Gene namesi
    Name:Ldoc1
    Synonyms:Gm366
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome X

    Organism-specific databases

    MGIiMGI:2685212. Ldoc1.

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 151151Protein LDOC1PRO_0000084392Add
    BLAST

    Proteomic databases

    PRIDEiQ7TPY9.

    Expressioni

    Gene expression databases

    BgeeiQ7TPY9.
    CleanExiMM_LDOC1.
    GenevestigatoriQ7TPY9.

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi134 – 15017Asp/Glu-rich (highly acidic)Add
    BLAST

    Sequence similaritiesi

    Belongs to the LDOC1 family.Curated

    Phylogenomic databases

    eggNOGiNOG46550.
    GeneTreeiENSGT00510000047956.
    HOGENOMiHOG000049195.
    HOVERGENiHBG052318.
    InParanoidiB1AV12.
    OMAiEFIVQTT.
    OrthoDBiEOG76HQ3K.
    PhylomeDBiQ7TPY9.
    TreeFamiTF337843.

    Family and domain databases

    InterProiIPR029750. LDOC1.
    [Graphical view]
    PANTHERiPTHR15503:SF3. PTHR15503:SF3. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q7TPY9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVEELLSLLH ALLDRHQALC MENHQLLKQL RLLVCERARL LRQVCPPSCP    50
    VPYPSRFSGE SGRLPEFIMQ TMSYMLANEE HFCNDAMKVA FLISLLSGEA 100
    EEWVMPYIES NSYVLGDYQA FVDEMKQYFG WGTDDEDDGD DDEEEEMEED 150
    H 151
    Length:151
    Mass (Da):17,546
    Last modified:October 1, 2003 - v1
    Checksum:i6E923EAAD774419D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL672025 Genomic DNA. Translation: CAM20842.1.
    BC052689 mRNA. Translation: AAH52689.1.
    AK137057 mRNA. Translation: BAE23221.1.
    CCDSiCCDS30163.1.
    RefSeqiNP_001018097.1. NM_001018087.1.
    UniGeneiMm.23468.

    Genome annotation databases

    EnsembliENSMUST00000075983; ENSMUSP00000075366; ENSMUSG00000057615.
    GeneIDi434784.
    KEGGimmu:434784.
    UCSCiuc009tij.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL672025 Genomic DNA. Translation: CAM20842.1 .
    BC052689 mRNA. Translation: AAH52689.1 .
    AK137057 mRNA. Translation: BAE23221.1 .
    CCDSi CCDS30163.1.
    RefSeqi NP_001018097.1. NM_001018087.1.
    UniGenei Mm.23468.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q7TPY9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000075983 ; ENSMUSP00000075366 ; ENSMUSG00000057615 .
    GeneIDi 434784.
    KEGGi mmu:434784.
    UCSCi uc009tij.1. mouse.

    Organism-specific databases

    CTDi 23641.
    MGIi MGI:2685212. Ldoc1.

    Phylogenomic databases

    eggNOGi NOG46550.
    GeneTreei ENSGT00510000047956.
    HOGENOMi HOG000049195.
    HOVERGENi HBG052318.
    InParanoidi B1AV12.
    OMAi EFIVQTT.
    OrthoDBi EOG76HQ3K.
    PhylomeDBi Q7TPY9.
    TreeFami TF337843.

    Miscellaneous databases

    NextBioi 409851.
    PROi Q7TPY9.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q7TPY9.
    CleanExi MM_LDOC1.
    Genevestigatori Q7TPY9.

    Family and domain databases

    InterProi IPR029750. LDOC1.
    [Graphical view ]
    PANTHERi PTHR15503:SF3. PTHR15503:SF3. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Egg.
    3. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Embryo.

    Entry informationi

    Entry nameiLDOC1_MOUSE
    AccessioniPrimary (citable) accession number: Q7TPY9
    Secondary accession number(s): B1AV12
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 20, 2005
    Last sequence update: October 1, 2003
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3