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Q7TPQ3

- SHPRH_MOUSE

UniProt

Q7TPQ3 - SHPRH_MOUSE

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Protein

E3 ubiquitin-protein ligase SHPRH

Gene

Shprh

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63' (By similarity).By similarity

Pathwayi

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi368 – 3758ATPPROSITE-ProRule annotation
Zinc fingeri649 – 70052PHD-typeAdd
BLAST
Zinc fingeri1423 – 147048RING-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. helicase activity Source: UniProtKB-KW
  4. ligase activity Source: UniProtKB-KW
  5. ubiquitin-protein transferase activity Source: Ensembl
  6. zinc ion binding Source: InterPro

GO - Biological processi

  1. DNA repair Source: UniProtKB-KW
  2. nucleosome assembly Source: InterPro
  3. protein polyubiquitination Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase, Ligase

Keywords - Biological processi

DNA damage, DNA repair, Ubl conjugation pathway

Keywords - Ligandi

ATP-binding, Metal-binding, Nucleotide-binding, Zinc

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
E3 ubiquitin-protein ligase SHPRH (EC:3.6.4.-, EC:6.3.2.-)
Alternative name(s):
SNF2, histone-linker, PHD and RING finger domain-containing helicase
Gene namesi
Name:Shprh
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 10

Organism-specific databases

MGIiMGI:1917581. Shprh.

Subcellular locationi

GO - Cellular componenti

  1. nucleosome Source: InterPro
  2. nucleus Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 16741674E3 ubiquitin-protein ligase SHPRHPRO_0000284919Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei261 – 2611PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ7TPQ3.
PaxDbiQ7TPQ3.
PRIDEiQ7TPQ3.

PTM databases

PhosphoSiteiQ7TPQ3.

Expressioni

Tissue specificityi

Broadly expressed (at protein level).1 Publication

Gene expression databases

BgeeiQ7TPQ3.
CleanExiMM_SHPRH.
ExpressionAtlasiQ7TPQ3. baseline and differential.
GenevestigatoriQ7TPQ3.

Interactioni

Subunit structurei

Homodimer. Interacts with HLTF, PCNA, UBE2N and RAD18 (By similarity).By similarity

Protein-protein interaction databases

BioGridi234474. 5 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ7TPQ3.
SMRiQ7TPQ3. Positions 645-707, 709-980, 991-1409, 1506-1672.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini302 – 38483Helicase ATP-binding; first partPROSITE-ProRule annotationAdd
BLAST
Domaini433 – 50775H15PROSITE-ProRule annotationAdd
BLAST
Domaini701 – 859159Helicase ATP-binding; second partPROSITE-ProRule annotationAdd
BLAST
Domaini1505 – 1663159Helicase C-terminalPROSITE-ProRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi810 – 8134DEAQ box

Domaini

The RING finger mediates E3 ubiquitin ligase activity.By similarity

Sequence similaritiesi

Belongs to the SNF2/RAD54 helicase family.Curated
Contains 1 H15 (linker histone H1/H5 globular) domain.PROSITE-ProRule annotation
Contains 1 helicase ATP-binding domain.PROSITE-ProRule annotation
Contains 1 helicase C-terminal domain.PROSITE-ProRule annotation
Contains 1 PHD-type zinc finger.Curated
Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri649 – 70052PHD-typeAdd
BLAST
Zinc fingeri1423 – 147048RING-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG0553.
GeneTreeiENSGT00730000111123.
HOVERGENiHBG059171.
InParanoidiQ7TPQ3.
KOiK15710.
OMAiFEGLVKQ.
OrthoDBiEOG7ZD1TJ.
PhylomeDBiQ7TPQ3.
TreeFamiTF324273.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.40.10. 2 hits.
3.40.50.300. 4 hits.
InterProiIPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR005818. Histone_H1/H5_H15.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
IPR011991. WHTH_DNA-bd_dom.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00271. Helicase_C. 1 hit.
PF00538. Linker_histone. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00526. H15. 1 hit.
SM00249. PHD. 1 hit.
SM00184. RING. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 6 hits.
SSF57903. SSF57903. 1 hit.
PROSITEiPS51504. H15. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS01359. ZF_PHD_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q7TPQ3-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSSRRKRAPP MKVDEERQQQ LHWNMHEDLR SEPLTMTVGE QACSDADSSS
60 70 80 90 100
DCIIIDEGPP ESALHRDKKR RSETVSVLEA TEEETRLSVT LNVTVSPYRV
110 120 130 140 150
DNSWKAFLGD FALQLLPKES LVEHFSERTF TLSPSESSSQ FLIYVHSECK
160 170 180 190 200
NVEKQENVLE GSAGVCSKGI RVESSFSSDM LQDLAWLQKR RGIKLYQRPD
210 220 230 240 250
GTHTIKVGIY ILEAGLTRLD FMSDAGSRMK KFNQLMKRVM EKLHNFIIPD
260 270 280 290 300
VLEEEEEGSE SEPEGQDIDE LYHFVKQTHQ QETRSVQVDV QHPALIPVLR
310 320 330 340 350
PYQREAVNWM LQQEQFRSAP PADNSLHFLW REIVTPDGLK LYYNPYTGCI
360 370 380 390 400
IRDFPHAGPQ LLGGILADEM GLGKTVEVLA LILTHTRQDV KQDALTLPEG
410 420 430 440 450
KVVNYFIPTH CPREKVKNRE IQDTEYEPKE KVHCPPTRVM ILTAVKEMNG
460 470 480 490 500
KKGVSILSIY KYVSSIFRYD VQRNRGLLKR MLKCLIFEGL VKQIKGHGFS
510 520 530 540 550
GTFTLGKNYK EDVFDKTKKQ AVGSPRKIEK ELRKSVNKDA DSEYLPSNTS
560 570 580 590 600
DDDEPYYYYC KAGKSRSKLK KPALLTKKGK GQSVHLDSQG DAPAAGVCAS
610 620 630 640 650
TDVHVSENTC VSEDKQTQEA KDCAESPNPA AEELAQSNTS SPCETSDYRF
660 670 680 690 700
ECICGEFDQI GHKPRVQCLK CHLWQHAKCV NYEEKNLKVK PFYCPHCLVA
710 720 730 740 750
MEPVSTRATL IISPSSICHQ WVDEINRHVR SSSLRVLVYQ GVKKHGFLQP
760 770 780 790 800
HFLAEQDIVI ITYDVLRSEL NYVNIPHSNS EDGRRLRNQK RYMAIPSPLV
810 820 830 840 850
AVEWWRICLD EAQMVECPTV KAAEMAQRLS GINRWCISGT PVQRGLEDLF
860 870 880 890 900
GLVVFLGIEP YCVKHWWIRL LYHPYCKKNP QHLYSFIAKI MWRSAKKDVI
910 920 930 940 950
DQIQIPPQTE EMHWLHFSPV ERHFYHRQHE VCCQDAIVKL RKISDWALKL
960 970 980 990 1000
SSLDRRTVSS ILYPLLRLRQ ACCHPQAVRG EFLPLQKSTM TMEELLTSLQ
1010 1020 1030 1040 1050
KKCGTECEEA HRQLVCALNG LAGIHIIKGE YALAAELYRE VLRSSEEHKG
1060 1070 1080 1090 1100
KLKTDSLQRL HATHNLMELL GAKHPGIPPT LRDGRLEEEA KQLREHYMSK
1110 1120 1130 1140 1150
CNTEVAEAQQ ALQPVQQSIR ELQRKIHSNS PWWLNVIHRA MEFSVDEELV
1160 1170 1180 1190 1200
QRVRNEISSN YKQQTDKLSM SEKFRDCRGL QFLLTTQMEE LHKFQKLVRE
1210 1220 1230 1240 1250
AVKKLEKPPS REVIESATVC HLRPARLPLN CCVFCKADEL FTEYESKLFF
1260 1270 1280 1290 1300
NTVKGQTAIF EEMIEDEEGL VDDRVPTTTR GLWAVSETER SMKAILSFAR
1310 1320 1330 1340 1350
SHRFDVEYVD EGSVSMDLFE AWKKEYKLLH EYWMTLRNRV SAVDELAMAT
1360 1370 1380 1390 1400
ERLRVRHPKE PKPNPPVHHI IEPHEVEQNR IKLVNDKAVA TSQLQKKLGQ
1410 1420 1430 1440 1450
LLYLTNLEKS QDKTSGGINP EPCPICARQL GKQWAVLTCG HCFCNECTSI
1460 1470 1480 1490 1500
IIEQYSVGSH RSSIKCAICR QTTSHKEVSY VFTSEKANQE DDIPVKGSHS
1510 1520 1530 1540 1550
TKVEAVVRTL MKIQLRDPGA KALVFSTWQD VLDIISKALT DNNMEFTQIS
1560 1570 1580 1590 1600
RIKTFQENLS AFKYDPHINI LLLPLHTGSN GLTIIEATHV LLVEPILNPA
1610 1620 1630 1640 1650
HELQAIGRVH RIGQTKPTIV HRFLIKATIE ERMQAMLKTA ERSHTSSSGK
1660 1670
HSEASVLTVA GLADLFTKEN EELE
Length:1,674
Mass (Da):191,490
Last modified:October 1, 2003 - v1
Checksum:i2491B2F32F326393
GO
Isoform 2 (identifier: Q7TPQ3-2) [UniParc]FASTAAdd to Basket

Also known as: A

The sequence of this isoform differs from the canonical sequence as follows:
     1617-1674: Missing.

Show »
Length:1,616
Mass (Da):185,068
Checksum:i64D639BE774E29B6
GO
Isoform 3 (identifier: Q7TPQ3-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1030-1031: EY → RR
     1032-1674: Missing.

Show »
Length:1,031
Mass (Da):118,054
Checksum:i08CB942E51F9AB41
GO
Isoform 4 (identifier: Q7TPQ3-5) [UniParc]FASTAAdd to Basket

Also known as: C

The sequence of this isoform differs from the canonical sequence as follows:
     1617-1662: PTIVHRFLIK...EASVLTVAGL → SIRGLECLKTYRYTSTHDHTLSTYLVLLSI
     1663-1674: Missing.

Show »
Length:1,646
Mass (Da):188,535
Checksum:i02C9E8FD7E75B2E5
GO

Sequence cautioni

The sequence AAO26655.1 differs from that shown. Reason: Probable cloning artifact.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti177 – 1771S → G in BAC38428. (PubMed:16141072)Curated
Sequence conflicti582 – 5821Q → H in BAC38428. (PubMed:16141072)Curated
Sequence conflicti928 – 9281Q → R in BAC38428. (PubMed:16141072)Curated
Sequence conflicti1285 – 12851V → I in AAO26654. (PubMed:12837266)Curated
Sequence conflicti1285 – 12851V → I in AAO26655. (PubMed:12837266)Curated
Sequence conflicti1285 – 12851V → I in AAO26656. (PubMed:12837266)Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1030 – 10312EY → RR in isoform 3. 1 PublicationVSP_024766
Alternative sequencei1032 – 1674643Missing in isoform 3. 1 PublicationVSP_024767Add
BLAST
Alternative sequencei1617 – 167458Missing in isoform 2. 1 PublicationVSP_024768Add
BLAST
Alternative sequencei1617 – 166246PTIVH…TVAGL → SIRGLECLKTYRYTSTHDHT LSTYLVLLSI in isoform 4. 1 PublicationVSP_024769Add
BLAST
Alternative sequencei1663 – 167412Missing in isoform 4. 1 PublicationVSP_024770Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY162264 mRNA. Translation: AAO26654.1.
AY162265 mRNA. Translation: AAO26655.1. Sequence problems.
AY162266 mRNA. Translation: AAO26656.1.
AK053448 mRNA. Translation: BAC35389.1.
AK082160 mRNA. Translation: BAC38428.1.
BC006883 mRNA. Translation: AAH06883.1.
BC055003 mRNA. Translation: AAH55003.1.
CCDSiCCDS35838.1. [Q7TPQ3-1]
CCDS35839.1. [Q7TPQ3-2]
CCDS70003.1. [Q7TPQ3-5]
RefSeqiNP_001071175.1. NM_001077707.1. [Q7TPQ3-1]
NP_001271283.1. NM_001284354.1. [Q7TPQ3-5]
NP_766525.3. NM_172937.3. [Q7TPQ3-2]
XP_006512803.1. XM_006512740.1. [Q7TPQ3-1]
UniGeneiMm.133101.

Genome annotation databases

EnsembliENSMUST00000044053; ENSMUSP00000039422; ENSMUSG00000090112. [Q7TPQ3-1]
ENSMUST00000054814; ENSMUSP00000125849; ENSMUSG00000090112. [Q7TPQ3-2]
ENSMUST00000159541; ENSMUSP00000132870; ENSMUSG00000090112. [Q7TPQ3-5]
ENSMUST00000159810; ENSMUSP00000125457; ENSMUSG00000090112. [Q7TPQ3-3]
GeneIDi268281.
KEGGimmu:268281.
UCSCiuc007ejp.1. mouse. [Q7TPQ3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY162264 mRNA. Translation: AAO26654.1 .
AY162265 mRNA. Translation: AAO26655.1 . Sequence problems.
AY162266 mRNA. Translation: AAO26656.1 .
AK053448 mRNA. Translation: BAC35389.1 .
AK082160 mRNA. Translation: BAC38428.1 .
BC006883 mRNA. Translation: AAH06883.1 .
BC055003 mRNA. Translation: AAH55003.1 .
CCDSi CCDS35838.1. [Q7TPQ3-1 ]
CCDS35839.1. [Q7TPQ3-2 ]
CCDS70003.1. [Q7TPQ3-5 ]
RefSeqi NP_001071175.1. NM_001077707.1. [Q7TPQ3-1 ]
NP_001271283.1. NM_001284354.1. [Q7TPQ3-5 ]
NP_766525.3. NM_172937.3. [Q7TPQ3-2 ]
XP_006512803.1. XM_006512740.1. [Q7TPQ3-1 ]
UniGenei Mm.133101.

3D structure databases

ProteinModelPortali Q7TPQ3.
SMRi Q7TPQ3. Positions 645-707, 709-980, 991-1409, 1506-1672.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 234474. 5 interactions.

PTM databases

PhosphoSitei Q7TPQ3.

Proteomic databases

MaxQBi Q7TPQ3.
PaxDbi Q7TPQ3.
PRIDEi Q7TPQ3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000044053 ; ENSMUSP00000039422 ; ENSMUSG00000090112 . [Q7TPQ3-1 ]
ENSMUST00000054814 ; ENSMUSP00000125849 ; ENSMUSG00000090112 . [Q7TPQ3-2 ]
ENSMUST00000159541 ; ENSMUSP00000132870 ; ENSMUSG00000090112 . [Q7TPQ3-5 ]
ENSMUST00000159810 ; ENSMUSP00000125457 ; ENSMUSG00000090112 . [Q7TPQ3-3 ]
GeneIDi 268281.
KEGGi mmu:268281.
UCSCi uc007ejp.1. mouse. [Q7TPQ3-1 ]

Organism-specific databases

CTDi 257218.
MGIi MGI:1917581. Shprh.

Phylogenomic databases

eggNOGi COG0553.
GeneTreei ENSGT00730000111123.
HOVERGENi HBG059171.
InParanoidi Q7TPQ3.
KOi K15710.
OMAi FEGLVKQ.
OrthoDBi EOG7ZD1TJ.
PhylomeDBi Q7TPQ3.
TreeFami TF324273.

Enzyme and pathway databases

UniPathwayi UPA00143 .

Miscellaneous databases

ChiTaRSi Shprh. mouse.
NextBioi 392208.
PROi Q7TPQ3.
SOURCEi Search...

Gene expression databases

Bgeei Q7TPQ3.
CleanExi MM_SHPRH.
ExpressionAtlasi Q7TPQ3. baseline and differential.
Genevestigatori Q7TPQ3.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
3.30.40.10. 2 hits.
3.40.50.300. 4 hits.
InterProi IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR005818. Histone_H1/H5_H15.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
IPR011991. WHTH_DNA-bd_dom.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view ]
Pfami PF00271. Helicase_C. 1 hit.
PF00538. Linker_histone. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view ]
SMARTi SM00487. DEXDc. 1 hit.
SM00526. H15. 1 hit.
SM00249. PHD. 1 hit.
SM00184. RING. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 6 hits.
SSF57903. SSF57903. 1 hit.
PROSITEi PS51504. H15. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS01359. ZF_PHD_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterization of a novel gene, SHPRH, encoding a conserved putative protein with SNF2/helicase and PHD-finger domains from the 6q24 region."
    Sood R., Makalowska I., Galdzicki M., Hu P., Eddings E., Robbins C.M., Moses T., Namkoong J., Chen S., Trent J.M.
    Genomics 82:153-161(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2 AND 4), TISSUE SPECIFICITY.
    Strain: BALB/c.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
    Strain: C57BL/6J.
    Tissue: Cerebellum and Eye.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: C57BL/6 and FVB/N.
    Tissue: Mammary tumor and Retina.

Entry informationi

Entry nameiSHPRH_MOUSE
AccessioniPrimary (citable) accession number: Q7TPQ3
Secondary accession number(s): Q7TQ27
, Q7TQ28, Q7TQ29, Q8BKE2, Q8BUW0, Q922Q3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: October 1, 2003
Last modified: November 26, 2014
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3