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Protein

Protein FAM19A1

Gene

Fam19a1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM19A1
Alternative name(s):
Chemokine-like protein TAFA-1
Gene namesi
Name:Fam19a1
Synonyms:Tafa1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:2443695. Fam19a1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 133114Protein FAM19A1PRO_0000042722Add
BLAST

Proteomic databases

MaxQBiQ7TPG8.
PaxDbiQ7TPG8.
PRIDEiQ7TPG8.

PTM databases

PhosphoSiteiQ7TPG8.

Expressioni

Gene expression databases

BgeeiQ7TPG8.
GenevisibleiQ7TPG8. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000074589.

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM19/TAFA family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IWJ7. Eukaryota.
ENOG410YH4T. LUCA.
GeneTreeiENSGT00390000001768.
HOGENOMiHOG000236302.
HOVERGENiHBG081496.
InParanoidiQ7TPG8.
OMAiWILYLWI.
OrthoDBiEOG7JDR0R.
PhylomeDBiQ7TPG8.
TreeFamiTF331749.

Family and domain databases

InterProiIPR020350. Chemokine-like_FAM19A2.
[Graphical view]
PfamiPF12020. TAFA. 1 hit.
[Graphical view]
ProDomiPD298472. Chemokine-like_2FAM19A2. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q7TPG8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMVSAMSWA LYLWISACAM LLCHGSLQHT FQQHHLHRPE GGTCEVIAAH
60 70 80 90 100
RCCNKNRIEE RSQTVKCSCL PGKVAGTTRN RPSCVDASIV IGKWWCEMEP
110 120 130
CLEGEECKTL PDNSGWMCAT GNKIKTTRIH PRT
Length:133
Mass (Da):14,873
Last modified:October 1, 2003 - v1
Checksum:iC5C20C764F8E7386
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY325120 mRNA. Translation: AAP92412.1.
BC132179 mRNA. Translation: AAI32180.1.
BC132181 mRNA. Translation: AAI32182.1.
CCDSiCCDS39574.1.
RefSeqiNP_877960.1. NM_182808.3.
UniGeneiMm.489890.

Genome annotation databases

EnsembliENSMUST00000075080; ENSMUSP00000074589; ENSMUSG00000059187.
ENSMUST00000122120; ENSMUSP00000113152; ENSMUSG00000059187.
GeneIDi320265.
KEGGimmu:320265.
UCSCiuc009dae.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY325120 mRNA. Translation: AAP92412.1.
BC132179 mRNA. Translation: AAI32180.1.
BC132181 mRNA. Translation: AAI32182.1.
CCDSiCCDS39574.1.
RefSeqiNP_877960.1. NM_182808.3.
UniGeneiMm.489890.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000074589.

PTM databases

PhosphoSiteiQ7TPG8.

Proteomic databases

MaxQBiQ7TPG8.
PaxDbiQ7TPG8.
PRIDEiQ7TPG8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000075080; ENSMUSP00000074589; ENSMUSG00000059187.
ENSMUST00000122120; ENSMUSP00000113152; ENSMUSG00000059187.
GeneIDi320265.
KEGGimmu:320265.
UCSCiuc009dae.2. mouse.

Organism-specific databases

CTDi407738.
MGIiMGI:2443695. Fam19a1.

Phylogenomic databases

eggNOGiENOG410IWJ7. Eukaryota.
ENOG410YH4T. LUCA.
GeneTreeiENSGT00390000001768.
HOGENOMiHOG000236302.
HOVERGENiHBG081496.
InParanoidiQ7TPG8.
OMAiWILYLWI.
OrthoDBiEOG7JDR0R.
PhylomeDBiQ7TPG8.
TreeFamiTF331749.

Miscellaneous databases

ChiTaRSiFam19a1. mouse.
NextBioi396387.
PROiQ7TPG8.
SOURCEiSearch...

Gene expression databases

BgeeiQ7TPG8.
GenevisibleiQ7TPG8. MM.

Family and domain databases

InterProiIPR020350. Chemokine-like_FAM19A2.
[Graphical view]
PfamiPF12020. TAFA. 1 hit.
[Graphical view]
ProDomiPD298472. Chemokine-like_2FAM19A2. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "TAFA: a novel secreted family with conserved cysteine residues and restricted expression in the brain."
    Tom Tang Y., Emtage P., Funk W.D., Hu T., Arterburn M., Park E.E., Rupp F.
    Genomics 83:727-734(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: C57BL/6J.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.

Entry informationi

Entry nameiF19A1_MOUSE
AccessioniPrimary (citable) accession number: Q7TPG8
Secondary accession number(s): A2RSN6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: October 1, 2003
Last modified: January 20, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.