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Protein

Beta-synuclein

Gene

sncb

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • dopaminergic neuron differentiation Source: ZFIN
  • larval locomotory behavior Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-synucleinUniRule annotation
Gene namesi
Name:sncbImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 14

Organism-specific databases

ZFINiZDB-GENE-040426-1615. sncb.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSDARG00000041627.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000061012.

Family & Domainsi

Sequence similaritiesi

Belongs to the synuclein family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410IZ8U. Eukaryota.
ENOG4111Y4R. LUCA.
GeneTreeiENSGT00390000016161.
HOGENOMiHOG000008691.
HOVERGENiHBG000481.
OMAiQQDYEPE.
OrthoDBiEOG091G11PA.
TreeFamiTF332776.

Family and domain databases

Gene3Di1.10.287.700. 1 hit.
InterProiIPR001058. Synuclein.
IPR002461. Synuclein_beta.
[Graphical view]
PANTHERiPTHR13820. PTHR13820. 1 hit.
PfamiPF01387. Synuclein. 1 hit.
[Graphical view]
PRINTSiPR01213. BSYNUCLEIN.
PR01211. SYNUCLEIN.

Sequencei

Sequence statusi: Complete.

Q7SX92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDVFMKGLSK AKEGMAVAAE KTKEGVAVAA EKTKEGVMFV GSKTKDSVAT
60 70 80 90 100
VAEKTKEQAS QLGGAVMSGA GNIAAATGLV KKDEFPSDMN PEFGQEATEE
110 120
PGEGLMDPEG QTYDDNQQES QDYEPEA
Length:127
Mass (Da):13,341
Last modified:October 1, 2003 - v1
Checksum:i33552ACBBD455842
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928074 Genomic DNA. No translation available.
BC055608 mRNA. Translation: AAH55608.1.
BC163140 mRNA. Translation: AAI63140.1.
EU368945 mRNA. Translation: ACA96673.1.
RefSeqiNP_957263.1. NM_200969.1.
UniGeneiDr.80813.

Genome annotation databases

EnsembliENSDART00000158723; ENSDARP00000135627; ENSDARG00000104945.
GeneIDi393944.
KEGGidre:393944.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928074 Genomic DNA. No translation available.
BC055608 mRNA. Translation: AAH55608.1.
BC163140 mRNA. Translation: AAI63140.1.
EU368945 mRNA. Translation: ACA96673.1.
RefSeqiNP_957263.1. NM_200969.1.
UniGeneiDr.80813.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000061012.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000158723; ENSDARP00000135627; ENSDARG00000104945.
GeneIDi393944.
KEGGidre:393944.

Organism-specific databases

CTDi6620.
ZFINiZDB-GENE-040426-1615. sncb.

Phylogenomic databases

eggNOGiENOG410IZ8U. Eukaryota.
ENOG4111Y4R. LUCA.
GeneTreeiENSGT00390000016161.
HOGENOMiHOG000008691.
HOVERGENiHBG000481.
OMAiQQDYEPE.
OrthoDBiEOG091G11PA.
TreeFamiTF332776.

Gene expression databases

BgeeiENSDARG00000041627.

Family and domain databases

Gene3Di1.10.287.700. 1 hit.
InterProiIPR001058. Synuclein.
IPR002461. Synuclein_beta.
[Graphical view]
PANTHERiPTHR13820. PTHR13820. 1 hit.
PfamiPF01387. Synuclein. 1 hit.
[Graphical view]
PRINTSiPR01213. BSYNUCLEIN.
PR01211. SYNUCLEIN.
ProtoNetiSearch...

Entry informationi

Entry nameiQ7SX92_DANRE
AccessioniPrimary (citable) accession number: Q7SX92
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2003
Last sequence update: October 1, 2003
Last modified: November 2, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.