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Protein

Globin-F1

Gene
N/A
Organism
Eptatretus burgeri (Inshore hagfish)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi71Iron (heme distal ligand)PROSITE-ProRule annotation1 Publication1
Metal bindingi103Iron (heme proximal ligand)PROSITE-ProRule annotation1 Publication1
Binding sitei142Heme1 Publication1

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Oxygen transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Globin-F1
OrganismiEptatretus burgeri (Inshore hagfish)
Taxonomic identifieri7764 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataCyclostomataHyperotretiMyxiniformesMyxinidaeEptatretinaeEptatretus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002324211 – 146Globin-F1Add BLAST146

Interactioni

Subunit structurei

Monomer.1 Publication

Structurei

Secondary structure

1146
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 7Combined sources3
Helixi13 – 27Combined sources15
Helixi30 – 44Combined sources15
Helixi46 – 51Combined sources6
Turni53 – 57Combined sources5
Helixi59 – 61Combined sources3
Helixi62 – 64Combined sources3
Helixi66 – 83Combined sources18
Turni84 – 87Combined sources4
Helixi89 – 105Combined sources17
Helixi113 – 124Combined sources12
Helixi129 – 143Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1IT2X-ray1.60A/B1-146[»]
1IT3X-ray2.10A/B/C/D1-146[»]
ProteinModelPortaliQ7SID0.
SMRiQ7SID0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ7SID0.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni51 – 54Heme binding1 Publication4
Regioni71 – 74Heme binding1 Publication4
Regioni99 – 109Heme binding1 PublicationAdd BLAST11
Regioni114 – 117Heme binding1 Publication4

Sequence similaritiesi

Belongs to the globin family.PROSITE-ProRule annotation

Phylogenomic databases

HOVERGENiHBG098500.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR013314. Globin_lamprey/hagfish.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
PRINTSiPR01906. FISHGLOBIN.
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01033. GLOBIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7SID0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
PIIDQGPLPT LTDGDKKAIN KIWPKIYKEY EQYSLNILLR FLKCFPQAQA
60 70 80 90 100
SFPKFSTKKS NLEQDPEVKH QAVVIFNKVN EIINSMDNQE EIIKSLKDLS
110 120 130 140
QKHKTVFKVD SIWFKELSSI FVSTIDGGAE FEKLFSIICI LLRSAY
Length:146
Mass (Da):16,843
Last modified:December 15, 2003 - v1
Checksum:iBDADA2752C60B25D
GO

Cross-referencesi

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1IT2X-ray1.60A/B1-146[»]
1IT3X-ray2.10A/B/C/D1-146[»]
ProteinModelPortaliQ7SID0.
SMRiQ7SID0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG098500.

Miscellaneous databases

EvolutionaryTraceiQ7SID0.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR013314. Globin_lamprey/hagfish.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
PRINTSiPR01906. FISHGLOBIN.
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01033. GLOBIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGLBF1_EPTBU
AccessioniPrimary (citable) accession number: Q7SID0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 18, 2006
Last sequence update: December 15, 2003
Last modified: November 2, 2016
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.