Q7RPC6 (Q7RPC6_PLAYO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

ORF Names:

PY01533 EMBL EAA20874.1

Organism

Plasmodium yoelii yoelii [Reference proteome] EMBL EAA20874.1

Taxonomic identifier

73239 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Alveolata › Apicomplexa › Aconoidasida › Haemosporida › Plasmodium › Plasmodium (Vinckeia) › Plasmodium yoelii

Protein attributes

Sequence length	826 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EAA20874.1

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL EAA20874.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW lagging strand elongation Inferred from Biological aspect of Ancestor. Source: RefGenome nucleotide-excision repair Inferred from Biological aspect of Ancestor. Source: RefGenome
Cellular_component	chromosome Inferred from Biological aspect of Ancestor. Source: RefGenome mitochondrion Inferred from Biological aspect of Ancestor. Source: RefGenome nucleus Inferred from Biological aspect of Ancestor. Source: RefGenome
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from Biological aspect of Ancestor. Source: RefGenome
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7RPC6 [UniParc]. Last modified December 15, 2003. Version 1. Checksum: 32E37316CE828FAE	FASTA	826	93,736
	10 20 30 40 50 60 MDGDEQCDTK IEESHVKSEE KEASKRKNTN DDGAKTKKSK VKNENEIKKG SLFNCKVYED 70 80 90 100 110 120 EKISDLSSPK FNPANFDISN LCLSEKDKIK HKFKDSLLFT FLTNTFNQIE ELKGSGAGSK 130 140 150 160 170 180 KNVAIILSNV FRVLIYYSPN DLIPAVYITL NKVAPDYQNV EAGVGEALIL KTMSEAYSRT 190 200 210 220 230 240 EASIKKDLQQ IEDLGIIAES CSCKMRTIFP LPRLTIQSVF NELKSIPNIS GSNSQQKKRE 250 260 270 280 290 300 VIKKLLVSAK TSEAKYIVRF LQQRLRIGVN SATVLQALAY AFVLTRPEIP ENIIKDGKMM 310 320 330 340 350 360 NEKLLNERIV VKGDKDNCDD DATEVKNENN IKLEKTNDTD NKTNVLDTDQ FNNLVKSIKI 370 380 390 400 410 420 RNERMSKPNL FFNIGKEGDT RLLPIFKELK NAYCDINNDS DIFECMEKSV KSALCELPNI 430 440 450 460 470 480 EMIIQNLLSG DDMNVLMKKC TVKTGVPVQP MLAKPTKGIQ EVLDRFNNVT FTCEYKYDGE 490 500 510 520 530 540 RAQIHYIDKD NIKIFSRNLE TMTEKYPDVI QIVKDQIMPG VTESIIDSEV VAYDIENKKI 550 560 570 580 590 600 LPFQILTTRK RKDVDIENIK VKICLFPFDL ICCNGVPVIK EPLEIRRKLL YSLLRCKEGV 610 620 630 640 650 660 LEYATHSEMN NIDDIDIFLQ DAIENNCEGL MVKTLLDNAS YEPSRRSLNW LKVKKDYIEG 670 680 690 700 710 720 LSDSVDLVPI AGYYGKGKRS GVYGAFVLAA YNSETENFQT VCKAGTGFSD EILNALHESL 730 740 750 760 770 780 SDKIIPNKKS YYEVSDKLNP DVWFDAHYVW EIKAADLSLS PVHTAAIGVY SDDKGIGLRF 790 800 810 820 PRFLRLRDDK NPEQATTAQQ IVEFYEAQFA SNKNKNNNYN DESGSE

References

[1]

"Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii." Carlton J.M., Angiuoli S.V., Suh B.B., Kooij T.W., Pertea M., Silva J.C., Ermolaeva M.D., Allen J.E., Selengut J.D., Koo H.L., Peterson J.D., Pop M., Kosack D.S., Shumway M.F., Bidwell S.L., Shallom S.J., van Aken S.E., Riedmuller S.B. , Feldblyum T.V., Cho J.K., Quackenbush J., Sedegah M., Shoaibi A., Cummings L.M., Florens L., Yates J.R. III, Raine J.D., Sinden R.E., Harris M.A., Cunningham D.A., Preiser P.R., Bergman L.W., Vaidya A.B., van Lin L.H., Janse C.J., Waters A.P., Smith H.O., White O.R., Salzberg S.L., Venter J.C., Fraser C.M., Hoffman S.L., Gardner M.J., Carucci D.J. Nature 419:512-519(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 17XNL EMBL EAA20874.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABL01000407 Genomic DNA. Translation: EAA20874.1.
RefSeq	XP_729309.1. XM_724216.1.
3D structure databases
ProteinModelPortal	Q7RPC6.
ModBase	Search...
Protein-protein interaction databases
STRING	73239.Q7RPC6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3801864.
KEGG	pyo:PY01533.
Organism-specific databases
EuPathDB	PlasmoDB:PY01533.
Phylogenomic databases
eggNOG	COG1793.
KO	K10747.
Family and domain databases
Gene3D	1.10.3260.10. 2 hits. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7RPC6_PLAYO

Accession

Primary (citable) accession number: Q7RPC6

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2003
Last sequence update:	December 15, 2003
Last modified:	May 1, 2013
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)