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Q7RPC6

- Q7RPC6_PLAYO

UniProt

Q7RPC6 - Q7RPC6_PLAYO

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Protein

DNA ligase

Gene

PY01533

Organism
Plasmodium yoelii yoelii
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: RefGenome

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation Source: RefGenome
  3. DNA ligation involved in DNA repair Source: InterPro
  4. DNA recombination Source: UniProtKB-KW
  5. lagging strand elongation Source: RefGenome
  6. nucleotide-excision repair Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PY01533Imported
OrganismiPlasmodium yoelii yoeliiImported
Taxonomic identifieri73239 [NCBI]
Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
ProteomesiUP000008553: Unassembled WGS sequence

Organism-specific databases

EuPathDBiPlasmoDB:PY01533.

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: RefGenome
  2. mitochondrion Source: RefGenome
  3. nucleus Source: RefGenome
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi73239.Q7RPC6.

Structurei

3D structure databases

ProteinModelPortaliQ7RPC6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
InParanoidiQ7RPC6.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7RPC6 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDGDEQCDTK IEESHVKSEE KEASKRKNTN DDGAKTKKSK VKNENEIKKG
60 70 80 90 100
SLFNCKVYED EKISDLSSPK FNPANFDISN LCLSEKDKIK HKFKDSLLFT
110 120 130 140 150
FLTNTFNQIE ELKGSGAGSK KNVAIILSNV FRVLIYYSPN DLIPAVYITL
160 170 180 190 200
NKVAPDYQNV EAGVGEALIL KTMSEAYSRT EASIKKDLQQ IEDLGIIAES
210 220 230 240 250
CSCKMRTIFP LPRLTIQSVF NELKSIPNIS GSNSQQKKRE VIKKLLVSAK
260 270 280 290 300
TSEAKYIVRF LQQRLRIGVN SATVLQALAY AFVLTRPEIP ENIIKDGKMM
310 320 330 340 350
NEKLLNERIV VKGDKDNCDD DATEVKNENN IKLEKTNDTD NKTNVLDTDQ
360 370 380 390 400
FNNLVKSIKI RNERMSKPNL FFNIGKEGDT RLLPIFKELK NAYCDINNDS
410 420 430 440 450
DIFECMEKSV KSALCELPNI EMIIQNLLSG DDMNVLMKKC TVKTGVPVQP
460 470 480 490 500
MLAKPTKGIQ EVLDRFNNVT FTCEYKYDGE RAQIHYIDKD NIKIFSRNLE
510 520 530 540 550
TMTEKYPDVI QIVKDQIMPG VTESIIDSEV VAYDIENKKI LPFQILTTRK
560 570 580 590 600
RKDVDIENIK VKICLFPFDL ICCNGVPVIK EPLEIRRKLL YSLLRCKEGV
610 620 630 640 650
LEYATHSEMN NIDDIDIFLQ DAIENNCEGL MVKTLLDNAS YEPSRRSLNW
660 670 680 690 700
LKVKKDYIEG LSDSVDLVPI AGYYGKGKRS GVYGAFVLAA YNSETENFQT
710 720 730 740 750
VCKAGTGFSD EILNALHESL SDKIIPNKKS YYEVSDKLNP DVWFDAHYVW
760 770 780 790 800
EIKAADLSLS PVHTAAIGVY SDDKGIGLRF PRFLRLRDDK NPEQATTAQQ
810 820
IVEFYEAQFA SNKNKNNNYN DESGSE
Length:826
Mass (Da):93,736
Last modified:December 15, 2003 - v1
Checksum:i32E37316CE828FAE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABL01000407 Genomic DNA. Translation: EAA20874.1.
RefSeqiXP_729309.1. XM_724216.1.

Genome annotation databases

GeneIDi3801864.
KEGGipyo:PY01533.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABL01000407 Genomic DNA. Translation: EAA20874.1 .
RefSeqi XP_729309.1. XM_724216.1.

3D structure databases

ProteinModelPortali Q7RPC6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 73239.Q7RPC6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3801864.
KEGGi pyo:PY01533.

Organism-specific databases

EuPathDBi PlasmoDB:PY01533.

Phylogenomic databases

eggNOGi COG1793.
InParanoidi Q7RPC6.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 17XNLImported.

Entry informationi

Entry nameiQ7RPC6_PLAYO
AccessioniPrimary (citable) accession number: Q7RPC6
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2003
Last sequence update: December 15, 2003
Last modified: October 29, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3