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Q7RPC6

- Q7RPC6_PLAYO

UniProt

Q7RPC6 - Q7RPC6_PLAYO

Protein

DNA ligase

Gene

PY01533

Organism
Plasmodium yoelii yoelii
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (15 Dec 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: RefGenome

    GO - Biological processi

    1. DNA ligation Source: RefGenome
    2. DNA ligation involved in DNA repair Source: InterPro
    3. DNA recombination Source: UniProtKB-KW
    4. lagging strand elongation Source: RefGenome
    5. nucleotide-excision repair Source: RefGenome

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:PY01533Imported
    OrganismiPlasmodium yoelii yoeliiImported
    Taxonomic identifieri73239 [NCBI]
    Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
    ProteomesiUP000008553: Unassembled WGS sequence

    Organism-specific databases

    EuPathDBiPlasmoDB:PY01533.

    Subcellular locationi

    GO - Cellular componenti

    1. chromosome Source: RefGenome
    2. mitochondrion Source: RefGenome
    3. nucleus Source: RefGenome

    Interactioni

    Protein-protein interaction databases

    STRINGi73239.Q7RPC6.

    Structurei

    3D structure databases

    ProteinModelPortaliQ7RPC6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1793.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 2 hits.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q7RPC6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDGDEQCDTK IEESHVKSEE KEASKRKNTN DDGAKTKKSK VKNENEIKKG    50
    SLFNCKVYED EKISDLSSPK FNPANFDISN LCLSEKDKIK HKFKDSLLFT 100
    FLTNTFNQIE ELKGSGAGSK KNVAIILSNV FRVLIYYSPN DLIPAVYITL 150
    NKVAPDYQNV EAGVGEALIL KTMSEAYSRT EASIKKDLQQ IEDLGIIAES 200
    CSCKMRTIFP LPRLTIQSVF NELKSIPNIS GSNSQQKKRE VIKKLLVSAK 250
    TSEAKYIVRF LQQRLRIGVN SATVLQALAY AFVLTRPEIP ENIIKDGKMM 300
    NEKLLNERIV VKGDKDNCDD DATEVKNENN IKLEKTNDTD NKTNVLDTDQ 350
    FNNLVKSIKI RNERMSKPNL FFNIGKEGDT RLLPIFKELK NAYCDINNDS 400
    DIFECMEKSV KSALCELPNI EMIIQNLLSG DDMNVLMKKC TVKTGVPVQP 450
    MLAKPTKGIQ EVLDRFNNVT FTCEYKYDGE RAQIHYIDKD NIKIFSRNLE 500
    TMTEKYPDVI QIVKDQIMPG VTESIIDSEV VAYDIENKKI LPFQILTTRK 550
    RKDVDIENIK VKICLFPFDL ICCNGVPVIK EPLEIRRKLL YSLLRCKEGV 600
    LEYATHSEMN NIDDIDIFLQ DAIENNCEGL MVKTLLDNAS YEPSRRSLNW 650
    LKVKKDYIEG LSDSVDLVPI AGYYGKGKRS GVYGAFVLAA YNSETENFQT 700
    VCKAGTGFSD EILNALHESL SDKIIPNKKS YYEVSDKLNP DVWFDAHYVW 750
    EIKAADLSLS PVHTAAIGVY SDDKGIGLRF PRFLRLRDDK NPEQATTAQQ 800
    IVEFYEAQFA SNKNKNNNYN DESGSE 826
    Length:826
    Mass (Da):93,736
    Last modified:December 15, 2003 - v1
    Checksum:i32E37316CE828FAE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABL01000407 Genomic DNA. Translation: EAA20874.1.
    RefSeqiXP_729309.1. XM_724216.1.

    Genome annotation databases

    GeneIDi3801864.
    KEGGipyo:PY01533.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABL01000407 Genomic DNA. Translation: EAA20874.1 .
    RefSeqi XP_729309.1. XM_724216.1.

    3D structure databases

    ProteinModelPortali Q7RPC6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 73239.Q7RPC6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 3801864.
    KEGGi pyo:PY01533.

    Organism-specific databases

    EuPathDBi PlasmoDB:PY01533.

    Phylogenomic databases

    eggNOGi COG1793.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 2 hits.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 17XNLImported.

    Entry informationi

    Entry nameiQ7RPC6_PLAYO
    AccessioniPrimary (citable) accession number: Q7RPC6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2003
    Last sequence update: December 15, 2003
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3