Unreviewed, UniProtKB/TrEMBL Q7PD39 (Q7PD39_ANOGA)

Names and origin

Protein names

Recommended name:
Histone H3 RuleBase RU003444V0

Gene names

ORF Names:

AgaP_AGAP012559 EMBL EAA03005.3, AgaP_AGAP012572 EMBL EAA03406.3, AgaP_AGAP012573 EMBL EAL42097.3

Organism

Anopheles gambiae str. PEST EMBL EAA03005.3

Taxonomic identifier

180454 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Nematocera › Culicoidea › Culicidae › Anophelinae › Anopheles

Protein attributes

Sequence length	136 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Subunit structure	The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity. RuleBase RU004471V0
Sequence similarities	Belongs to the histone H3 family.
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Cellular component	Chromosomal protein Nucleosome core RuleBase RU004471V0 Nucleus RuleBase RU004471V0 Spearmint SPM000164
Ligand	DNA-binding
Gene Ontology (GO)
Biological process	nucleosome assembly Inferred from electronic annotation. Source: InterPro
Cellular component	nucleosome Inferred from electronic annotation. Source: UniProtKB-KW nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q7PD39-1 [UniParc]. Last modified October 23, 2007. Version 3. Checksum: 6FD8508EA50A0EEC	FASTA	136	15,388
	10 20 30 40 50 60 MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH RYRPGTVALR EIRRYQKSTE 70 80 90 100 110 120 LLIRKLPFQR LVREIAQDFK TDLRFQSSAV MALQEASEAY LVGLFEDTNL CAIHAKRVTI 130 MPKDIQLARR IRGERA

References

[1]	"The genome sequence of the malaria mosquito Anopheles gambiae." Holt R.A., Subramanian G.M., Halpern A., Sutton G.G., Charlab R., Nusskern D.R., Wincker P., Clark A.G., Ribeiro J.M.C., Wides R., Salzberg S.L., Loftus B.J., Yandell M.D., Majoros W.H., Rusch D.B., Lai Z., Kraft C.L., Abril J.F. , Anthouard V., Arensburger P., Atkinson P.W., Baden H., de Berardinis V., Baldwin D., Benes V., Biedler J., Blass C., Bolanos R., Boscus D., Barnstead M., Cai S., Center A., Chaturverdi K., Christophides G.K., Chrystal M.A.M., Clamp M., Cravchik A., Curwen V., Dana A., Delcher A., Dew I., Evans C.A., Flanigan M., Grundschober-Freimoser A., Friedli L., Gu Z., Guan P., Guigo R., Hillenmeyer M.E., Hladun S.L., Hogan J.R., Hong Y.S., Hoover J., Jaillon O., Ke Z., Kodira C.D., Kokoza E., Koutsos A., Letunic I., Levitsky A.A., Liang Y., Lin J.-J., Lobo N.F., Lopez J.R., Malek J.A., McIntosh T.C., Meister S., Miller J.R., Mobarry C., Mongin E., Murphy S.D., O'Brochta D.A., Pfannkoch C., Qi R., Regier M.A., Remington K., Shao H., Sharakhova M.V., Sitter C.D., Shetty J., Smith T.J., Strong R., Sun J., Thomasova D., Ton L.Q., Topalis P., Tu Z.J., Unger M.F., Walenz B., Wang A.H., Wang J., Wang M., Wang X., Woodford K.J., Wortman J.R., Wu M., Yao A., Zdobnov E.M., Zhang H., Zhao Q., Zhao S., Zhu S.C., Zhimulev I., Coluzzi M., della Torre A., Roth C.W., Louis C., Kalush F., Mural R.J., Myers E.W., Adams M.D., Smith H.O., Broder S., Gardner M.J., Fraser C.M., Birney E., Bork P., Brey P.T., Venter J.C., Weissenbach J., Kafatos F.C., Collins F.H., Hoffman S.L. Science 298:129-149(2002) [PubMed: 12364791] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: PEST EMBL EAA03005.3.
[2]	"The Anopheles gambiae genome: an update." Mongin E., Louis C., Holt R.A., Birney E., Collins F.H. Trends Parasitol. 20:49-52(2004) [PubMed: 14747013] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: PEST EMBL EAA03005.3.
[3]	"Update of the Anopheles gambiae PEST genome assembly." Sharakhova M.V., Hammond M.P., Lobo N.F., Krzywinski J., Unger M.F., Hillenmeyer M.E., Bruggner R.V., Birney E., Collins F.H. Genome Biol. 8:R5-R5(2007) [PubMed: 17210077] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: PEST EMBL EAA03005.3.
[4]	VectorBase Hammond M. Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: PEST EMBL EAA03005.3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AAAB01007568 Genomic DNA. Translation: EAA03005.3. AAAB01008468 Genomic DNA. Translation: EAA03406.3. AAAB01008468 Genomic DNA. Translation: EAL42097.3.
RefSeq	XP_305996.3. XP_307601.3. XP_307606.3. XP_315130.3. XP_318362.3. XP_560604.5.
3D structure databases
SMR	Q7PD39. Positions 17-136.
ModBase	Search...
Genome annotation databases
GeneID	1267439. 1269020. 1269025. 1275848. 1278746. 3292284.
KEGG	aga:AgaP_AGAP003910. aga:AgaP_AGAP005024. aga:AgaP_AGAP005025. aga:AgaP_AGAP012559. aga:AgaP_AGAP012572. aga:AgaP_AGAP012573.
VectorBase	AGAP003910. Anopheles gambiae. AGAP005024. Anopheles gambiae. AGAP005025. Anopheles gambiae. AGAP012559. Anopheles gambiae. AGAP012572. Anopheles gambiae. AGAP012573. Anopheles gambiae.
Phylogenomic databases
HOGENOM	HBG715487.
OMA	FAMARTK.
Family and domain databases
InterPro	IPR009072. Histone-fold. IPR007125. Histone_core_D. IPR000164. Histone_H3. [Graphical view]
Gene3D	G3DSA:1.10.20.10. Histone-fold. 1 hit.
Pfam	PF00125. Histone. 1 hit. [Graphical view]
PRINTS	PR00622. HISTONEH3.
SMART	SM00428. H3. 1 hit. [Graphical view]
SUPFAM	SSF47113. Histone-fold. 1 hit.
PROSITE	PS00322. HISTONE_H3_1. 1 hit. PS00959. HISTONE_H3_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q7PD39_ANOGA

Accession

Primary (citable) accession number: Q7PD39

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2003
Last sequence update:	October 23, 2007
Last modified:	March 2, 2010
This is version 60 of the entry and version 3 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)