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Q7PD39 (Q7PD39_ANOGA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone H3 RuleBase RU004471
Gene names
ORF Names:AgaP_AGAP012559 EMBL EAA03005.3, AgaP_AGAP012572 EMBL EAA03406.3, AgaP_AGAP012573 EMBL EAL42097.3
OrganismAnopheles gambiae str. PEST EMBL EAA03005.3
Taxonomic identifier180454 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Nematocera › Culicoidea › Culicidae › Anophelinae › Anopheles ›

Protein attributes

Sequence length136 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subunit structure

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity. RuleBase RU004471

Sequence similarities

Belongs to the histone H3 family. RuleBase RU004471

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EAA03005.3

Ontologies

Keywords
   Cellular componentChromosome
Nucleosome core RuleBase RU004471
Nucleus SAAS SAAS000164 RuleBase RU004471
   LigandDNA-binding
Gene Ontology (GO)
   Biological_processnucleosome assembly

Inferred from electronic annotation. Source: InterPro

   Cellular_componentnucleosome

Inferred from electronic annotation. Source: UniProtKB-KW

nucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q7PD39 [UniParc].

Last modified October 23, 2007. Version 3.
Checksum: 6FD8508EA50A0EEC

FASTA13615,388
        10         20         30         40         50         60 
MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH RYRPGTVALR EIRRYQKSTE 

        70         80         90        100        110        120 
LLIRKLPFQR LVREIAQDFK TDLRFQSSAV MALQEASEAY LVGLFEDTNL CAIHAKRVTI 

       130 
MPKDIQLARR IRGERA

« Hide

References

[1]"The genome sequence of the malaria mosquito Anopheles gambiae."
Holt R.A., Subramanian G.M., Halpern A., Sutton G.G., Charlab R., Nusskern D.R., Wincker P., Clark A.G., Ribeiro J.M.C., Wides R., Salzberg S.L., Loftus B.J., Yandell M.D., Majoros W.H., Rusch D.B., Lai Z., Kraft C.L., Abril J.F. expand/collapse author list , Anthouard V., Arensburger P., Atkinson P.W., Baden H., de Berardinis V., Baldwin D., Benes V., Biedler J., Blass C., Bolanos R., Boscus D., Barnstead M., Cai S., Center A., Chaturverdi K., Christophides G.K., Chrystal M.A.M., Clamp M., Cravchik A., Curwen V., Dana A., Delcher A., Dew I., Evans C.A., Flanigan M., Grundschober-Freimoser A., Friedli L., Gu Z., Guan P., Guigo R., Hillenmeyer M.E., Hladun S.L., Hogan J.R., Hong Y.S., Hoover J., Jaillon O., Ke Z., Kodira C.D., Kokoza E., Koutsos A., Letunic I., Levitsky A.A., Liang Y., Lin J.-J., Lobo N.F., Lopez J.R., Malek J.A., McIntosh T.C., Meister S., Miller J.R., Mobarry C., Mongin E., Murphy S.D., O'Brochta D.A., Pfannkoch C., Qi R., Regier M.A., Remington K., Shao H., Sharakhova M.V., Sitter C.D., Shetty J., Smith T.J., Strong R., Sun J., Thomasova D., Ton L.Q., Topalis P., Tu Z.J., Unger M.F., Walenz B., Wang A.H., Wang J., Wang M., Wang X., Woodford K.J., Wortman J.R., Wu M., Yao A., Zdobnov E.M., Zhang H., Zhao Q., Zhao S., Zhu S.C., Zhimulev I., Coluzzi M., della Torre A., Roth C.W., Louis C., Kalush F., Mural R.J., Myers E.W., Adams M.D., Smith H.O., Broder S., Gardner M.J., Fraser C.M., Birney E., Bork P., Brey P.T., Venter J.C., Weissenbach J., Kafatos F.C., Collins F.H., Hoffman S.L.
Science 298:129-149(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PEST EMBL EAA03005.3.
[2]The Anopheles Genome Sequencing Consortium
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PEST EMBL EAA03005.3.
[3]"The Anopheles gambiae genome: an update."
Mongin E., Louis C., Holt R.A., Birney E., Collins F.H.
Trends Parasitol. 20:49-52(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PEST EMBL EAA03005.3.
[4]"Update of the Anopheles gambiae PEST genome assembly."
Sharakhova M.V., Hammond M.P., Lobo N.F., Krzywinski J., Unger M.F., Hillenmeyer M.E., Bruggner R.V., Birney E., Collins F.H.
Genome Biol. 8:R5-R5(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PEST EMBL EAA03005.3.
[5]VectorBase
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: PEST EMBL EAA03005.3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AAAB01007568 Genomic DNA. Translation: EAA03005.3.
AAAB01008468 Genomic DNA. Translation: EAA03406.3.
AAAB01008468 Genomic DNA. Translation: EAL42097.3.
RefSeqXP_305996.3. XM_305996.3.
XP_307601.3. XM_307601.3.
XP_307606.3. XM_307606.3.
XP_315130.3. XM_315130.3.
XP_318362.3. XM_318362.3.
XP_560604.5. XM_560604.5.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING7165.AGAP012573-PA.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1267439.
1269020.
1269025.
1275848.
1278746.
3292284.
KEGGaga:AgaP_AGAP003910.
aga:AgaP_AGAP005024.
aga:AgaP_AGAP005025.
aga:AgaP_AGAP012559.
aga:AgaP_AGAP012572.
aga:AgaP_AGAP012573.
VectorBaseAGAP003910. Anopheles gambiae.
AGAP005024. Anopheles gambiae.
AGAP005025. Anopheles gambiae.
AGAP012559. Anopheles gambiae.
AGAP012572. Anopheles gambiae.
AGAP012573. Anopheles gambiae.

Phylogenomic databases

KOK11253.
OMARISKMAR.
OrthoDBEOG4M37RZ.

Family and domain databases

Gene3D1.10.20.10. 1 hit.
InterProIPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR000164. Histone_H3.
[Graphical view]
PANTHERPTHR11426. PTHR11426. 1 hit.
PfamPF00125. Histone. 1 hit.
[Graphical view]
PRINTSPR00622. HISTONEH3.
SMARTSM00428. H3. 1 hit.
[Graphical view]
SUPFAMSSF47113. Histone-fold. 1 hit.
PROSITEPS00322. HISTONE_H3_1. 1 hit.
PS00959. HISTONE_H3_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ7PD39_ANOGA
AccessionPrimary (citable) accession number: Q7PD39
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2003
Last sequence update: October 23, 2007
Last modified: May 1, 2013
This is version 82 of the entry and version 3 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)

Relevant documents

Recent format changes

Overview of recent format changes

to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info·Documents