Reviewed,
UniProtKB/Swiss-Prot Q7MP37 (DEOC1_VIBVY)
Last modified
February 9, 2010.
Version 48.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Deoxyribose-phosphate aldolase 1 EC=4.1.2.4 Alternative name(s): Phosphodeoxyriboaldolase 1 Short name=Deoxyriboaldolase 1 Short name=DERA 1 | ||||
| Gene names |
| ||||
| Organism | Vibrio vulnificus (strain YJ016) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 196600 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio |
Protein attributes
| Sequence length | 219 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Catalytic activity | 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP MF_00114 |
| Pathway | Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP MF_00114 |
| Subcellular location | Cytoplasm By similarity HAMAP MF_00114. |
| Sequence similarities | Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm |
| Ligand | Schiff base |
| Molecular function | Lyase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | carbohydrate catabolic process Inferred from electronic annotation. Source: HAMAP deoxyribonucleotide catabolic processInferred from electronic annotation. Source: InterPro |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 219 | 219 | Deoxyribose-phosphate aldolase 1 HAMAP MF_00114 | PRO_0000057284 | |||||
Sites | |||||||||
| Active site | 149 | 1 | Schiff-base intermediate with acetaldehyde By similarity | ||||||
| Active site | 178 | 1 | By similarity | ||||||
Sequences
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References
| [1] | "Comparative genome analysis of Vibrio vulnificus, a marine pathogen." Chen C.-Y., Wu K.-M., Chang Y.-C., Chang C.-H., Tsai H.-C., Liao T.-L., Liu Y.-M., Chen H.-J., Shen A.B.-T., Li J.-C., Su T.-L., Shao C.-P., Lee C.-T., Hor L.-I., Tsai S.-F. Genome Res. 13:2577-2587(2003) [PubMed: 14656965] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | BA000037 Genomic DNA. Translation: BAC93291.1. |
| RefSeq | NP_933320.1. |
3D structure databases | |
| SMR | Q7MP37. Positions 2-211. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q7MP37. |
Genome annotation databases | |
| GeneID | 2623294. |
| GenomeReviews | Gene locus VV0527 in contig BA000037_GR. |
| KEGG | vvy:VV0527. |
| NMPDR | fig|196600.1.peg.595. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0274. |
| HOGENOM | HBG636421. |
| OMA | CLEAREN. |
Enzyme and pathway databases | |
| BioCyc | VVUL196600:VV0527-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00114. DeoC_type1. [Tree] |
| InterPro | IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/AroFGH_arch. [Graphical view] |
| Gene3D | G3DSA:3.20.20.70. Aldolase_TIM. 1 hit. |
| PANTHER | PTHR10889. DeoC. 1 hit. |
| Pfam | PF01791. DeoC. 1 hit. [Graphical view] |
| PIRSF | PIRSF001357. DeoC. 1 hit. |
| TIGRFAMs | TIGR00126. deoC. 1 hit. |
| ProtoNet | Search... |
Entry information
| Entry name | DEOC1_VIBVY | ||||||||
| Accession | Primary (citable) accession number: Q7MP37 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with


