Q7MI41 (DEOD1_VIBVY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Purine nucleoside phosphorylase DeoD-type 1
Short name=PNP 1
EC=2.4.2.1

Gene names

Name:	deoD1
Ordered Locus Names:	VV2676

Organism

Vibrio vulnificus (strain YJ016) [Complete proteome] [HAMAP]

Taxonomic identifier

196600 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio › Vibrio vulnificus

Protein attributes

Sequence length	239 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627
Subunit structure	Homohexamer By similarity. HAMAP-Rule MF_01627
Sequence similarities	Belongs to the PNP/UDP phosphorylase family.
Sequence caution	The sequence BAC95440.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Molecular function	Glycosyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	purine nucleoside metabolic process Inferred from electronic annotation. Source: HAMAP
Molecular_function	purine-nucleoside phosphorylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 239	239	Purine nucleoside phosphorylase DeoD-type 1 HAMAP-Rule MF_01627		PRO_0000063178

Sequences

	Sequence		Length	Mass (Da)
	Q7MI41 [UniParc]. Last modified January 10, 2006. Version 2. Checksum: 156CCC732B236B05	FASTA	239	25,885
	10 20 30 40 50 60 MATPHINAEM GDFADVVLMP GDPLRAKYIA ETFLEDVVQV CDVRNMYGFT GTYKGRKVSV 70 80 90 100 110 120 MGHGMGIPSC SIYATELIKD YGVKKIIRVG SCGAVSTDIK VRDVVIGMGA CTDSKVNRIR 130 140 150 160 170 180 FKGHDFAAIA DYKMVKAAEE AAKARGIDVK VGNLFSAELF YTPDPEMFDV MDKYGIVGVE 190 200 210 220 230 MEAAGIYGVA AEYGAKALTI CTVSDHIKTG EQTTSEERQN TFNDMMIVAL DSVLLGDAE

References

[1]

"Comparative genome analysis of Vibrio vulnificus, a marine pathogen." Chen C.-Y., Wu K.-M., Chang Y.-C., Chang C.-H., Tsai H.-C., Liao T.-L., Liu Y.-M., Chen H.-J., Shen A.B.-T., Li J.-C., Su T.-L., Shao C.-P., Lee C.-T., Hor L.-I., Tsai S.-F. Genome Res. 13:2577-2587(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: YJ016.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000037 Genomic DNA. Translation: BAC95440.1. Different initiation.
RefSeq	NP_935469.2. NC_005139.1.
3D structure databases
ProteinModelPortal	Q7MI41.
SMR	Q7MI41. Positions 2-237.
ModBase	Search...
Protein-protein interaction databases
STRING	196600.VV2676.
Proteomic databases
PRIDE	Q7MI41.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAC95440; BAC95440; BAC95440.
GeneID	2625484.
KEGG	vvy:VV2676.
PATRIC	20172184. VBIVibVul40472_2675.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0813.
HOGENOM	HOG000274896.
KO	K03784.
OMA	SFETHAF.
ProtClustDB	PRK05819.
Enzyme and pathway databases
BioCyc	VVUL196600:GJ9W-2735-MONOMER.
Family and domain databases
Gene3D	3.40.50.1580. 1 hit.
HAMAP	MF_01627. Pur_nucleosid_phosp.
InterPro	IPR004402. DeoD-type. IPR018017. Nucleoside_phosphorylase. IPR018016. Nucleoside_phosphorylase_CS. IPR000845. Nucleoside_phosphorylase_d. [Graphical view]
PANTHER	PTHR21234. PTHR21234. 1 hit.
Pfam	PF01048. PNP_UDP_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR00107. deoD. 1 hit.
PROSITE	PS01232. PNP_UDP_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

DEOD1_VIBVY

Accession

Primary (citable) accession number: Q7MI41

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 10, 2006
Last sequence update:	January 10, 2006
Last modified:	May 29, 2013
This is version 63 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program