Ribose-5-phosphate isomerase A - Vibrio vulnificus (strain YJ016)

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Q7MHL9 (RPIA_VIBVY) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 55. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Ribose-5-phosphate isomerase A
EC=5.3.1.6

Alternative name(s):
Phosphoriboisomerase A
Short name=PRI

Gene names

Name:	rpiA
Ordered Locus Names:	VV2850

Organism

Vibrio vulnificus (strain YJ016) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	218 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Catalytic activity	D-ribose 5-phosphate = D-ribulose 5-phosphate. HAMAP MF_00170
Pathway	Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. HAMAP MF_00170
Sequence similarities	Belongs to the ribose 5-phosphate isomerase family.
Sequence caution	The sequence BAC95614.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Molecular function	Isomerase
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological process	pentose-phosphate shunt, non-oxidative branch Inferred from electronic annotation. Source: InterPro
Molecular function	ribose-5-phosphate isomerase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

218

Ribose-5-phosphate isomerase A HAMAP MF_00170

PRO_0000158494

Secondary structure

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218

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

Q7MHL9 [UniParc].

Last modified January 16, 2004. Version 2.
Checksum: B5915E8097F52511
Show »

218

22,985

        10         20         30         40         50         60 
MTQDEMKKAA GWAALKYVEK GSIVGVGTGS TVNHFIDALG TMSEEIKGAV SSSVASTEKL 

        70         80         90        100        110        120 
EALGIKIFDC NEVASLDIYV DGADEINADR EMIKGGGAAL TREKIVAAIA DKFICIVDGT 

       130        140        150        160        170        180 
KAVDVLGTFP LPVEVIPMAR SYVARQLVKL GGDPCYREGV ITDNGNVILD VYGMKITNPK 

       190        200        210 
QLEDQINAIP GVVTVGLFAH RGADVVITGT PEGAKIEE

References

[1]	"Comparative genome analysis of Vibrio vulnificus, a marine pathogen." Chen C.-Y., Wu K.-M., Chang Y.-C., Chang C.-H., Tsai H.-C., Liao T.-L., Liu Y.-M., Chen H.-J., Shen A.B.-T., Li J.-C., Su T.-L., Shao C.-P., Lee C.-T., Hor L.-I., Tsai S.-F. Genome Res. 13:2577-2587(2003) [PubMed: 14656965] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: YJ016.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000037 Genomic DNA. Translation: BAC95614.1. Different initiation.

RefSeq

NP_935643.1. NC_005139.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3ENQ	X-ray	2.00	A/B	1-218	[»]
3ENV	X-ray	2.00	A/B	1-218	[»]
3ENW	X-ray	2.00	A/B	1-218	[»]

ProteinModelPortal

SMR

Q7MHL9. Positions 1-215.

ModBase

Protein-protein interaction databases

STRING

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

GenomeReviews

Gene locus VV2850 in contig BA000037_GR.

KEGG

NMPDR

fig|196600.1.peg.2918.

PATRIC

20172530. VBIVibVul40472_2838.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

OMA

PhylomeDB

ProtClustDB

Enzyme and pathway databases

BioCyc

VVUL196600:VV2850-MONOMER.

Family and domain databases

HAMAP

MF_00170. Rib_5P_isom_A.
[Tree]

InterPro

IPR004788. Ribose5P_isomerase_typA.
IPR020672. Ribose5P_isomerase_typA_subgr.
[Graphical view]

KO

PANTHER

PTHR11934. RpiA. 1 hit.

Pfam

PF06026. Rib_5-P_isom_A. 1 hit.
[Graphical view]

TIGRFAMs

TIGR00021. RpiA. 1 hit.

ProtoNet

Entry information

Entry name

RPIA_VIBVY

Accession

Primary (citable) accession number: Q7MHL9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 16, 2004
Last sequence update:	January 16, 2004
Last modified:	January 25, 2012
This is version 55 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents