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Q7MFG6 (DEOD2_VIBVY) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Purine nucleoside phosphorylase DeoD-type 2

Short name=PNP 2
EC=2.4.2.1
Gene names
Name:deoD2
Ordered Locus Names:VVA0354
OrganismVibrio vulnificus (strain YJ016) [Complete proteome] [HAMAP]
Taxonomic identifier196600 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Subunit structure

Homohexamer By similarity. HAMAP-Rule MF_01627

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Sequence caution

The sequence BAC96380.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpurine nucleoside metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionpurine-nucleoside phosphorylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 236236Purine nucleoside phosphorylase DeoD-type 2 HAMAP-Rule MF_01627
PRO_0000063179

Sequences

Sequence LengthMass (Da)Tools
Q7MFG6 [UniParc].

Last modified January 10, 2006. Version 2.
Checksum: 50AA3F3DE816C2E3

FASTA23625,668
        10         20         30         40         50         60 
MATPHINAQP GDFAETVLMP GDPLRAKYIA ETFLEDVKQV CDVRNMFGFT GTYKGKKVSV 

        70         80         90        100        110        120 
MGHGMGIPSA CIYVHELIAE YGVKNVIRVG SCGAVRDDVN LMDVVIGMGA STDSKVNRIR 

       130        140        150        160        170        180 
FNDHDFAALA DYGLLEEAVK QARAQNVPVK VGNVFSADLF YTPEADIFEK MEKLGILGVD 

       190        200        210        220        230 
MEAAGIYGVA ADLKAKALTI LTVSDHIIRG EKLSSEDRQK SFNDMMKVAL ETAINL 

« Hide

References

[1]"Comparative genome analysis of Vibrio vulnificus, a marine pathogen."
Chen C.-Y., Wu K.-M., Chang Y.-C., Chang C.-H., Tsai H.-C., Liao T.-L., Liu Y.-M., Chen H.-J., Shen A.B.-T., Li J.-C., Su T.-L., Shao C.-P., Lee C.-T., Hor L.-I., Tsai S.-F.
Genome Res. 13:2577-2587(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: YJ016.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000038 Genomic DNA. Translation: BAC96380.1. Different initiation.
RefSeqNP_936410.2. NC_005140.1.

3D structure databases

ProteinModelPortalQ7MFG6.
SMRQ7MFG6. Positions 2-234.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING196600.VVA0354.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC96380; BAC96380; BAC96380.
GeneID2621360.
KEGGvvy:VVA0354.
PATRIC20174104. VBIVibVul40472_3560.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0813.
HOGENOMHOG000274896.
KOK03784.
OMASGHDFAA.
OrthoDBEOG6BKJC5.
ProtClustDBPRK13374.

Enzyme and pathway databases

BioCycVVUL196600:GJ9W-3747-MONOMER.

Family and domain databases

Gene3D3.40.50.1580. 1 hit.
HAMAPMF_01627. Pur_nucleosid_phosp.
InterProIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERPTHR21234. PTHR21234. 1 hit.
PfamPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMSSF53167. SSF53167. 1 hit.
TIGRFAMsTIGR00107. deoD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOD2_VIBVY
AccessionPrimary (citable) accession number: Q7MFG6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: January 10, 2006
Last modified: April 16, 2014
This is version 66 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families