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Protein

Ribose import ATP-binding protein RbsA

Gene

rbsA

Organism
Vibrio vulnificus (strain YJ016)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system.UniRule annotation

Catalytic activityi

ATP + H2O + monosaccharide(Out) = ADP + phosphate + monosaccharide(In).UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi38 – 458ATPUniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Sugar transport, Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciVVUL196600:GJ9W-3963-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribose import ATP-binding protein RbsAUniRule annotation (EC:3.6.3.17UniRule annotation)
Gene namesi
Name:rbsAUniRule annotation
Ordered Locus Names:VVA0569
OrganismiVibrio vulnificus (strain YJ016)
Taxonomic identifieri196600 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002675 Componenti: Chromosome II

Subcellular locationi

  • Cell inner membrane UniRule annotation; Peripheral membrane protein UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 501501Ribose import ATP-binding protein RbsAPRO_0000261119Add
BLAST

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (RbsA), two transmembrane proteins (RbsC and RbsD) and a solute-binding protein (RbsB).UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ7MEV1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 242237ABC transporter 1UniRule annotationAdd
BLAST
Domaini253 – 495243ABC transporter 2UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. [View classification]UniRule annotation
Contains 2 ABC transporter domains.UniRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG1129.
KOiK10441.
OMAiCAVGKKI.
OrthoDBiEOG6QK4RR.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR015861. ABC_transpr_RbsA.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
PS51254. RBSA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7MEV1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQAILQLSE IEKAFPGVKA LDKASLNVYP GRVMALMGEN GAGKSTLMKV
60 70 80 90 100
LTGIYSRDAG EIVYQGQPAQ FKGPRDSQQA GISIIHQELN LIRELTIAEN
110 120 130 140 150
IFLGREITSA FGRIDWPQMY AEADKLLARL KVKHSSKTLL GQLSLGEQQM
160 170 180 190 200
VEIAKALSFE SKVIIMDEPT DALTDTETEA LFSVIRELRE QGCGIVYISH
210 220 230 240 250
RLKEIFEICD DITVLRDGKF IGQCEVVQTD EDGLIEMMVG RKLEEQYPRI
260 270 280 290 300
DVVHGQTCLE VIGLTGSGVH DVSFTLKRGE ILGISGLMGA GRTELMKVIY
310 320 330 340 350
GALPSERGVI NLDNRTINPV SPQDGLANGI AYISEDRKGD GLVLGLSVKE
360 370 380 390 400
NMSLCALDKL SKGVQIQHQD EVVAVDDFIQ LFNIKTPSRE QIIGNLSGGN
410 420 430 440 450
QQKVAIAKGL MTKPKVLILD EPTRGVDVGA KKEIYQLINK FKAEGMSIIL
460 470 480 490 500
VSSEMPEVLG MSDRILVMHE GRITGEFEAK HADQEKLMAC AVGKKVSEEA

A
Length:501
Mass (Da):54,854
Last modified:December 15, 2003 - v1
Checksum:i8097D8EF3DBD7F80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000038 Genomic DNA. Translation: BAC96595.1.
RefSeqiNP_936625.1. NC_005140.1.
WP_011151929.1. NC_005140.1.

Genome annotation databases

EnsemblBacteriaiBAC96595; BAC96595; BAC96595.
GeneIDi2621120.
KEGGivvy:VVA0569.
PATRICi20174522. VBIVibVul40472_3768.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000038 Genomic DNA. Translation: BAC96595.1.
RefSeqiNP_936625.1. NC_005140.1.
WP_011151929.1. NC_005140.1.

3D structure databases

ProteinModelPortaliQ7MEV1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC96595; BAC96595; BAC96595.
GeneIDi2621120.
KEGGivvy:VVA0569.
PATRICi20174522. VBIVibVul40472_3768.

Phylogenomic databases

eggNOGiCOG1129.
KOiK10441.
OMAiCAVGKKI.
OrthoDBiEOG6QK4RR.

Enzyme and pathway databases

BioCyciVVUL196600:GJ9W-3963-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR015861. ABC_transpr_RbsA.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
PS51254. RBSA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YJ016.

Entry informationi

Entry nameiRBSA_VIBVY
AccessioniPrimary (citable) accession number: Q7MEV1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: December 15, 2003
Last modified: June 24, 2015
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.