Q7M6Y3 (PICA_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 85.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Phosphatidylinositol-binding clathrin assembly protein Alternative name(s): Clathrin assembly lymphoid myeloid leukemia Short name=CALM | ||||
| Gene names |
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| Organism | Mus musculus (Mouse) [Reference proteome] | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 660 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Assembly protein recruiting clathrin and adaptor protein complex 2 (AP2) to cell membranes at sites of coated-pit formation and clathrin-vesicle assembly. May be required to determine the amount of membrane to be recycled, possibly by regulating the size of the clathrin cage. Involved in AP2-dependent clathrin-mediated endocytosis at the neuromuscular junction. Plays a crucial role in fetal and adult hematopoiesis, and normal prenatal and postnatal growth and viability. Ref.1 Ref.4 |
| Subunit structure | Binds clathrin and phosphatidylinositol 4,5-bisphosphate By similarity. |
| Subcellular location | Membrane › clathrin-coated pit By similarity. Golgi apparatus By similarity. Cytoplasmic vesicle › clathrin-coated vesicle By similarity. Note: Colocalized with clathrin in the Golgi area By similarity. |
| Tissue specificity | Skins and livers of 1-week-old mice. Ref.1 |
| Sequence similarities | Contains 1 ENTH (epsin N-terminal homology) domain. |
| Sequence caution | The sequence BAC39454.2 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q7M6Y3-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q7M6Y3-2) The sequence of this isoform differs from the canonical sequence as follows: 420-469: Missing. 506-510: Missing. 594-601: Missing. | ||||||
| Isoform 3 (identifier: Q7M6Y3-3) The sequence of this isoform differs from the canonical sequence as follows: 420-469: Missing. 506-510: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q7M6Y3-4) The sequence of this isoform differs from the canonical sequence as follows: 420-469: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: Q7M6Y3-5) The sequence of this isoform differs from the canonical sequence as follows: 506-510: Missing. | ||||||
| Isoform 6 (identifier: Q7M6Y3-6) The sequence of this isoform differs from the canonical sequence as follows: 594-601: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 660 | 660 | Phosphatidylinositol-binding clathrin assembly protein | PRO_0000187063 | |||||
Regions | |||||||||
| Domain | 14 – 145 | 132 | ENTH | ||||||
Amino acid modifications | |||||||||
| Modified residue | 443 | 1 | Phosphoserine Ref.5 | ||||||
Natural variations | |||||||||
| Alternative sequence | 420 – 469 | 50 | Missing in isoform 2, isoform 3 and isoform 4. | VSP_050684 | |||||
| Alternative sequence | 506 – 510 | 5 | Missing in isoform 2, isoform 3 and isoform 5. | VSP_050685 | |||||
| Alternative sequence | 594 – 601 | 8 | Missing in isoform 2 and isoform 6. | VSP_050686 | |||||
Experimental info | |||||||||
| Sequence conflict | 522 | 1 | N → S in AAH21491. Ref.2 | ||||||
| Sequence conflict | 522 | 1 | N → S in AAH23843. Ref.2 | ||||||
| Sequence conflict | 522 | 1 | N → S in AAH25566. Ref.2 | ||||||
| Sequence conflict | 522 | 1 | N → S in AAH57683. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Mutations in the clathrin-assembly gene Picalm are responsible for the hematopoietic and iron metabolism abnormalities in fit1 mice." Klebig M.L., Wall M.D., Potter M.D., Rowe E.L., Carpenter D.A., Rinchik E.M. Proc. Natl. Acad. Sci. U.S.A. 100:8360-8365(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY. Strain: BALB/cRl. Tissue: Liver. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2; 3; 4; 5 AND 6). Strain: Czech II and FVB/N. Tissue: Mammary tumor and Retina. |
| [3] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 143-660 (ISOFORM 2). Strain: C57BL/6J. Tissue: Epididymis and Kidney. |
| [4] | "Mutations in the murine fitness 1 gene result in defective hematopoiesis." Potter M.D., Shinpock S.G., Popp R.A., Godfrey V., Carpenter D.A., Bernstein A., Johnson D.K., Rinchik E.M. Blood 90:1850-1857(1997) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [5] | "Large-scale phosphorylation analysis of mouse liver." Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-443, MASS SPECTROMETRY. Tissue: Liver. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY206701 mRNA. Translation: AAO17153.1. BK001028 mRNA. Translation: DAA01470.1. BC011470 mRNA. Translation: AAH11470.1. BC021491 mRNA. Translation: AAH21491.1. BC023843 mRNA. Translation: AAH23843.1. BC025566 mRNA. Translation: AAH25566.1. BC027116 mRNA. Translation: AAH27116.1. BC057683 mRNA. Translation: AAH57683.1. AK085472 mRNA. Translation: BAC39454.2. Different initiation. AK162360 mRNA. Translation: BAE36872.1. |
| IPI | IPI00264501. IPI00321378. IPI00404434. IPI00404435. IPI00404436. IPI00404438. |
| RefSeq | NP_001239449.1. NM_001252520.1. NP_001239450.1. NM_001252521.1. NP_001239451.1. NM_001252522.1. NP_001239452.1. NM_001252523.1. NP_001239453.1. NM_001252524.1. NP_666306.2. NM_146194.4. |
| UniGene | Mm.235175. Mm.393563. Mm.394497. |
3D structure databases | |
| ProteinModelPortal | Q7M6Y3. |
| SMR | Q7M6Y3. Positions 20-288. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q7M6Y3. 1 interaction. |
| STRING | 10090.ENSMUSP00000051092. |
PTM databases | |
| PhosphoSite | Q7M6Y3. |
Proteomic databases | |
| PaxDb | Q7M6Y3. |
| PRIDE | Q7M6Y3. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000049537; ENSMUSP00000051092; ENSMUSG00000039361. |
| GeneID | 233489. |
| KEGG | mmu:233489. |
| UCSC | uc009igq.1. mouse. uc009igr.1. mouse. uc009igs.1. mouse. uc009igt.1. mouse. uc009igu.1. mouse. |
Organism-specific databases | |
| CTD | 8301. |
| MGI | MGI:2385902. Picalm. |
Phylogenomic databases | |
| eggNOG | NOG267212. |
| GeneTree | ENSGT00390000008805. |
| HOVERGEN | HBG049391. |
| InParanoid | Q7M6Y3. |
| OMA | WNAATMA. |
| OrthoDB | EOG4C87RV. |
Gene expression databases | |
| Bgee | Q7M6Y3. |
| Genevestigator | Q7M6Y3. |
Family and domain databases | |
| Gene3D | 1.20.58.150. 1 hit. 1.25.40.90. 1 hit. |
| InterPro | IPR011417. ANTH_dom. IPR014712. Clathrin_Pinositid-bd_GAT-like. IPR008942. ENTH_VHS. IPR013809. Epsin-like_N. [Graphical view] |
| Pfam | PF07651. ANTH. 1 hit. [Graphical view] |
| SMART | SM00273. ENTH. 1 hit. [Graphical view] |
| SUPFAM | SSF48464. ENTH_VHS. 1 hit. |
| PROSITE | PS50942. ENTH. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PICALM. mouse. |
| NextBio | 381725. |
| SOURCE | Search... |
Entry information
| Entry name | PICA_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q7M6Y3 Secondary accession number(s): Q3TS04 Q921L0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
