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Q7L1I2

- SV2B_HUMAN

UniProt

Q7L1I2 - SV2B_HUMAN

Protein

Synaptic vesicle glycoprotein 2B

Gene

SV2B

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 102 (01 Oct 2014)
      Sequence version 1 (05 Jul 2004)
      Previous versions | rss
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    Functioni

    Probably plays a role in the control of regulated secretion in neural and endocrine cells.By similarity

    GO - Molecular functioni

    1. transmembrane transporter activity Source: InterPro

    GO - Biological processi

    1. neurotransmitter transport Source: UniProtKB-KW

    Keywords - Biological processi

    Neurotransmitter transport, Transport

    Enzyme and pathway databases

    ReactomeiREACT_200616. Toxicity of botulinum toxin type E (BoNT/E).
    REACT_200617. Toxicity of botulinum toxin type D (BoNT/D).
    REACT_200659. Toxicity of botulinum toxin type F (BoNT/F).
    REACT_200737. Toxicity of botulinum toxin type A (BoNT/A).

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Synaptic vesicle glycoprotein 2B
    Gene namesi
    Name:SV2B
    Synonyms:KIAA0735
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 15

    Organism-specific databases

    HGNCiHGNC:16874. SV2B.

    Subcellular locationi

    Cytoplasmic vesiclesecretory vesiclesynaptic vesicle membrane By similarity; Multi-pass membrane protein By similarity. Cytoplasmic vesiclesecretory vesicleacrosome By similarity
    Note: Associated with synaptic-like microvesicles but not with insulin-containing vesicles in insulin-secreting cells of the pancreas. Localizes to microvesicles in the pinealocytes. Localizes to the acrosome in spermatids By similarity.By similarity

    GO - Cellular componenti

    1. acrosomal vesicle Source: UniProtKB-SubCell
    2. cell junction Source: UniProtKB-KW
    3. integral component of membrane Source: UniProtKB-KW
    4. synaptic vesicle membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell junction, Cytoplasmic vesicle, Membrane, Synapse

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA134930999.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 683683Synaptic vesicle glycoprotein 2BPRO_0000239768Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei423 – 4231PhosphotyrosineBy similarity
    Glycosylationi441 – 4411N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi491 – 4911N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi516 – 5161N-linked (GlcNAc...)Sequence Analysis

    Post-translational modificationi

    N-glycosylated.By similarity
    The N-terminal cytoplasmic domain is phosphorylated by CK1.By similarity

    Keywords - PTMi

    Glycoprotein, Phosphoprotein

    Proteomic databases

    PaxDbiQ7L1I2.
    PRIDEiQ7L1I2.

    PTM databases

    PhosphoSiteiQ7L1I2.

    Expressioni

    Gene expression databases

    BgeeiQ7L1I2.
    CleanExiHS_SV2B.
    GenevestigatoriQ7L1I2.

    Organism-specific databases

    HPAiHPA046247.

    Interactioni

    Subunit structurei

    Interacts with SYT1 in a calcium-independent manner. Forms a complex with SYT1, syntaxin-1 and SNAP25 By similarity.By similarity

    Protein-protein interaction databases

    BioGridi115228. 2 interactions.
    STRINGi9606.ENSP00000332818.

    Structurei

    3D structure databases

    ProteinModelPortaliQ7L1I2.
    SMRiQ7L1I2. Positions 128-407, 439-520.
    ModBaseiSearch...
    MobiDBiSearch...

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 108108CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini130 – 14819ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini170 – 18213CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini204 – 2052ExtracellularSequence Analysis
    Topological domaini227 – 23711CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini259 – 27719ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini299 – 39092CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini412 – 535124ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini557 – 5659CytoplasmicSequence Analysis
    Topological domaini587 – 5926ExtracellularSequence Analysis
    Topological domaini614 – 62613CytoplasmicSequence AnalysisAdd
    BLAST
    Topological domaini650 – 6534ExtracellularSequence Analysis
    Topological domaini673 – 68311CytoplasmicSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei109 – 12921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei149 – 16921HelicalSequence AnalysisAdd
    BLAST
    Transmembranei183 – 20321HelicalSequence AnalysisAdd
    BLAST
    Transmembranei206 – 22621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei238 – 25821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei278 – 29821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei391 – 41121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei536 – 55621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei566 – 58621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei593 – 61321HelicalSequence AnalysisAdd
    BLAST
    Transmembranei627 – 64923HelicalSequence AnalysisAdd
    BLAST
    Transmembranei654 – 67219HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the major facilitator superfamily.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG0477.
    HOGENOMiHOG000065727.
    HOVERGENiHBG053967.
    InParanoidiQ7L1I2.
    KOiK06258.
    OMAiIGWQCLF.
    OrthoDBiEOG74TWZ1.
    PhylomeDBiQ7L1I2.
    TreeFamiTF324824.

    Family and domain databases

    InterProiIPR001646. 5peptide_repeat.
    IPR011701. MFS.
    IPR020846. MFS_dom.
    IPR016196. MFS_dom_general_subst_transpt.
    IPR005828. Sub_transporter.
    IPR005829. Sugar_transporter_CS.
    IPR022308. SV2.
    [Graphical view]
    PANTHERiPTHR24065. PTHR24065. 1 hit.
    PfamiPF07690. MFS_1. 1 hit.
    PF13599. Pentapeptide_4. 1 hit.
    PF00083. Sugar_tr. 1 hit.
    [Graphical view]
    SUPFAMiSSF103473. SSF103473. 3 hits.
    TIGRFAMsiTIGR01299. synapt_SV2. 1 hit.
    PROSITEiPS50850. MFS. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q7L1I2-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MDDYKYQDNY GGYAPSDGYY RGNESNPEED AQSDVTEGHD EEDEIYEGEY    50
    QGIPHPDDVK AKQAKMAPSR MDSLRGQTDL MAERLEDEEQ LAHQYETIMD 100
    ECGHGRFQWI LFFVLGLALM ADGVEVFVVS FALPSAEKDM CLSSSKKGML 150
    GMIVYLGMMA GAFILGGLAD KLGRKRVLSM SLAVNASFAS LSSFVQGYGA 200
    FLFCRLISGI GIGGALPIVF AYFSEFLSRE KRGEHLSWLG IFWMTGGLYA 250
    SAMAWSIIPH YGWGFSMGTN YHFHSWRVFV IVCALPCTVS MVALKFMPES 300
    PRFLLEMGKH DEAWMILKQV HDTNMRAKGT PEKVFTVSNI KTPKQMDEFI 350
    EIQSSTGTWY QRWLVRFKTI FKQVWDNALY CVMGPYRMNT LILAVVWFAM 400
    AFSYYGLTVW FPDMIRYFQD EEYKSKMKVF FGEHVYGATI NFTMENQIHQ 450
    HGKLVNDKFT RMYFKHVLFE DTFFDECYFE DVTSTDTYFK NCTIESTIFY 500
    NTDLYEHKFI NCRFINSTFL EQKEGCHMDL EQDNDFLIYL VSFLGSLSVL 550
    PGNIISALLM DRIGRLKMIG GSMLISAVCC FFLFFGNSES AMIGWQCLFC 600
    GTSIAAWNAL DVITVELYPT NQRATAFGIL NGLCKFGAIL GNTIFASFVG 650
    ITKVVPILLA AASLVGGGLI ALRLPETREQ VLM 683
    Length:683
    Mass (Da):77,444
    Last modified:July 5, 2004 - v1
    Checksum:iB9818120898F09E2
    GO
    Isoform 2 (identifier: Q7L1I2-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-151: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:532
    Mass (Da):60,439
    Checksum:i0079FA3304D1C038
    GO

    Sequence cautioni

    The sequence BAA34455.2 differs from that shown. Reason: Erroneous initiation.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti683 – 6831M → I in CAG33367. 1 PublicationCurated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 151151Missing in isoform 2. 1 PublicationVSP_045194Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB018278 mRNA. Translation: BAA34455.2. Different initiation.
    CR457086 mRNA. Translation: CAG33367.1.
    AK294902 mRNA. Translation: BAG57991.1.
    FJ515843 Genomic DNA. Translation: ACS13737.1.
    AC123784 Genomic DNA. No translation available.
    AC127520 Genomic DNA. No translation available.
    CH471101 Genomic DNA. Translation: EAX02143.1.
    BC030011 mRNA. Translation: AAH30011.1.
    CCDSiCCDS10370.1. [Q7L1I2-1]
    CCDS53972.1. [Q7L1I2-2]
    RefSeqiNP_001161052.1. NM_001167580.1. [Q7L1I2-2]
    NP_055663.1. NM_014848.4. [Q7L1I2-1]
    XP_005255054.1. XM_005254997.2. [Q7L1I2-1]
    XP_005255055.1. XM_005254998.2. [Q7L1I2-1]
    UniGeneiHs.21754.

    Genome annotation databases

    EnsembliENST00000330276; ENSP00000332818; ENSG00000185518. [Q7L1I2-1]
    ENST00000394232; ENSP00000377779; ENSG00000185518. [Q7L1I2-1]
    ENST00000545111; ENSP00000443243; ENSG00000185518. [Q7L1I2-2]
    ENST00000557410; ENSP00000450992; ENSG00000185518. [Q7L1I2-1]
    GeneIDi9899.
    KEGGihsa:9899.
    UCSCiuc002bqt.3. human. [Q7L1I2-1]

    Polymorphism databases

    DMDMi74738530.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB018278 mRNA. Translation: BAA34455.2 . Different initiation.
    CR457086 mRNA. Translation: CAG33367.1 .
    AK294902 mRNA. Translation: BAG57991.1 .
    FJ515843 Genomic DNA. Translation: ACS13737.1 .
    AC123784 Genomic DNA. No translation available.
    AC127520 Genomic DNA. No translation available.
    CH471101 Genomic DNA. Translation: EAX02143.1 .
    BC030011 mRNA. Translation: AAH30011.1 .
    CCDSi CCDS10370.1. [Q7L1I2-1 ]
    CCDS53972.1. [Q7L1I2-2 ]
    RefSeqi NP_001161052.1. NM_001167580.1. [Q7L1I2-2 ]
    NP_055663.1. NM_014848.4. [Q7L1I2-1 ]
    XP_005255054.1. XM_005254997.2. [Q7L1I2-1 ]
    XP_005255055.1. XM_005254998.2. [Q7L1I2-1 ]
    UniGenei Hs.21754.

    3D structure databases

    ProteinModelPortali Q7L1I2.
    SMRi Q7L1I2. Positions 128-407, 439-520.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 115228. 2 interactions.
    STRINGi 9606.ENSP00000332818.

    PTM databases

    PhosphoSitei Q7L1I2.

    Polymorphism databases

    DMDMi 74738530.

    Proteomic databases

    PaxDbi Q7L1I2.
    PRIDEi Q7L1I2.

    Protocols and materials databases

    DNASUi 9899.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000330276 ; ENSP00000332818 ; ENSG00000185518 . [Q7L1I2-1 ]
    ENST00000394232 ; ENSP00000377779 ; ENSG00000185518 . [Q7L1I2-1 ]
    ENST00000545111 ; ENSP00000443243 ; ENSG00000185518 . [Q7L1I2-2 ]
    ENST00000557410 ; ENSP00000450992 ; ENSG00000185518 . [Q7L1I2-1 ]
    GeneIDi 9899.
    KEGGi hsa:9899.
    UCSCi uc002bqt.3. human. [Q7L1I2-1 ]

    Organism-specific databases

    CTDi 9899.
    GeneCardsi GC15P091643.
    HGNCi HGNC:16874. SV2B.
    HPAi HPA046247.
    MIMi 185861. gene.
    neXtProti NX_Q7L1I2.
    PharmGKBi PA134930999.
    HUGEi Search...
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi COG0477.
    HOGENOMi HOG000065727.
    HOVERGENi HBG053967.
    InParanoidi Q7L1I2.
    KOi K06258.
    OMAi IGWQCLF.
    OrthoDBi EOG74TWZ1.
    PhylomeDBi Q7L1I2.
    TreeFami TF324824.

    Enzyme and pathway databases

    Reactomei REACT_200616. Toxicity of botulinum toxin type E (BoNT/E).
    REACT_200617. Toxicity of botulinum toxin type D (BoNT/D).
    REACT_200659. Toxicity of botulinum toxin type F (BoNT/F).
    REACT_200737. Toxicity of botulinum toxin type A (BoNT/A).

    Miscellaneous databases

    ChiTaRSi SV2B. human.
    GeneWikii SV2B.
    GenomeRNAii 9899.
    NextBioi 37323.
    PROi Q7L1I2.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q7L1I2.
    CleanExi HS_SV2B.
    Genevestigatori Q7L1I2.

    Family and domain databases

    InterProi IPR001646. 5peptide_repeat.
    IPR011701. MFS.
    IPR020846. MFS_dom.
    IPR016196. MFS_dom_general_subst_transpt.
    IPR005828. Sub_transporter.
    IPR005829. Sugar_transporter_CS.
    IPR022308. SV2.
    [Graphical view ]
    PANTHERi PTHR24065. PTHR24065. 1 hit.
    Pfami PF07690. MFS_1. 1 hit.
    PF13599. Pentapeptide_4. 1 hit.
    PF00083. Sugar_tr. 1 hit.
    [Graphical view ]
    SUPFAMi SSF103473. SSF103473. 3 hits.
    TIGRFAMsi TIGR01299. synapt_SV2. 1 hit.
    PROSITEi PS50850. MFS. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
      Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
      DNA Res. 5:277-286(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Tissue: Brain.
    2. Ohara O., Suyama M., Nagase T., Ishikawa K., Kikuno R.
      Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: SEQUENCE REVISION.
    3. "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
      Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.
      Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    4. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Tissue: Brain.
    5. NHLBI resequencing and genotyping service (RS&G)
      Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    6. "Analysis of the DNA sequence and duplication history of human chromosome 15."
      Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
      , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
      Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    7. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    8. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Tissue: Testis.

    Entry informationi

    Entry nameiSV2B_HUMAN
    AccessioniPrimary (citable) accession number: Q7L1I2
    Secondary accession number(s): B4DH30
    , C6G489, O94840, Q6IAR8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 13, 2006
    Last sequence update: July 5, 2004
    Last modified: October 1, 2014
    This is version 102 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 15
      Human chromosome 15: entries, gene names and cross-references to MIM
    2. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3