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Q7KJA9 (Q7KJA9_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

SD06381p EMBL ACD81879.1

Super sex combs, isoform A EMBL AAG22338.1
EC=2.4.-.- EMBL AAG22338.1

Super sex combs, isoform B EMBL AAF57338.1
EC=2.4.-.- EMBL AAF57338.1

Super sex combs, isoform C EMBL AAG22339.1
EC=2.4.-.- EMBL AAG22339.1
Gene names
Name:sxc EMBL AAF57338.1 FlyBase FBgn0261403
Synonyms:CG10392-RC EMBL ACD81879.1, Ogt FlyBase FBgn0040295
ORF Names:CG10392 FlyBase FBgn0040295, Dmel_CG10392 EMBL AAF57338.1
OrganismDrosophila melanogaster (Fruit fly) EMBL AAF32311.1
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length1059 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q7KJA9 [UniParc].

Last modified October 3, 2006. Version 1.
Checksum: 48311D2370321B7D

FASTA1,059118,650
        10         20         30         40         50         60 
MHVEQTRINM QSQGQSHQLP SAAHILLDQN PNSTGSNLVV KQNDIQSLSS VGLLELAHRE 

        70         80         90        100        110        120 
YQAVDYESAE KHCMQLWRQD STNTGVLLLL SSIHFQCRRL DKSAQFSTLA IKQNPVLAEA 

       130        140        150        160        170        180 
YSNLGNVFKE RGQLQEALDN YRRAVRLKPD FIDGYINLAA ALVAARDMES AVQAYITALQ 

       190        200        210        220        230        240 
YNPDLYCVRS DLGNLLKALG RLEEAKACYL KAIETCPGFA VAWSNLGCVF NAQGEIWLAI 

       250        260        270        280        290        300 
HHFEKAVTLD PNFLDAYINL GNVLKEARIF DRAVAAYLRA LNLSPNNAVV HGNLACVYYE 

       310        320        330        340        350        360 
QGLIDLAIDT YRRAIELQPN FPDAYCNLAN ALKEKGQVKE AEDCYNTALR LCSNHADSLN 

       370        380        390        400        410        420 
NLANIKREQG YIEEATRLYL KALEVFPDFA AAHSNLASVL QQQGKLKEAL MHYKEAIRIQ 

       430        440        450        460        470        480 
PTFADAYSNM GNTLKELQDV SGALQCYTRA IQINPAFADA HSNLASIHKD SGNIPEAIQS 

       490        500        510        520        530        540 
YRTALKLKPD FPDAYCNLAH CLQIVCDWTD YDIRMKKLVS IVTEQLEKNR LPSVHPHHSM 

       550        560        570        580        590        600 
LYPLTHDCRK AIAARHANLC LEKVHVLHKK PYNFLKKLPT KGRLRIGYLS SDFGNHPTSH 

       610        620        630        640        650        660 
LMQSVPGLHD RSKVEIFCYA LSPDDGTTFR HKISRESENF VDLSQIPCNG KAADKIFNDG 

       670        680        690        700        710        720 
IHILVNMNGY TKGARNEIFA LRPAPIQVMW LGYPGTSGAS FMDYIITDSV TSPLELAYQY 

       730        740        750        760        770        780 
SEKLSYMPHT YFIGDHKQMF PHLKERIIVC DKQQSSVVDN VTVINATDLS PLVENTDVKE 

       790        800        810        820        830        840 
IKEVVNAQKP VEITHKVAEL PNTTQIVSMI ATGQVQTSLN GVVVQNGLAT TQTNNKAATG 

       850        860        870        880        890        900 
EEVPQNIVIT TRRQYMLPDD AVVYCNFNQL YKIDPQTLES WVEILKNVPK SVLWLLRFPA 

       910        920        930        940        950        960 
VGEQNIKKTV SDFGISPDRV IFSNVAAKEE HVRRGQLADI CLDTPLCNGH TTSMDVLWTG 

       970        980        990       1000       1010       1020 
TPVVTLPGET LASRVAASQL ATLGCPELIA RTREEYQNIA IRLGTKKEYL KALRAKVWKA 

      1030       1040       1050 
RVESPLFDCS QYAKGLEKLF LRMWEKYENG ELPDHISAV 

« Hide

References

« Hide 'large scale' references
[1]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[4]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[6]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3 (12), RESEARCH0079 (2002)
Cited for: NUCLEOTIDE SEQUENCE.
[9]Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]Drosophila Heterochromatin Genome Project
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[12]Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[14]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[15]"Drosophila melanogaster O-glycosyltransferase."
Rubenstein D.S., McEwen D.G., Peifer M.A.
Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF217788 mRNA. Translation: AAF32311.1.
AE013599 Genomic DNA. Translation: AAF57338.1.
AE013599 Genomic DNA. Translation: AAG22338.1.
AE013599 Genomic DNA. Translation: AAG22339.1.
BT032865 mRNA. Translation: ACD81879.1.
RefSeqNP_523620.1. NM_078896.2.
NP_724406.1. NM_165426.1.
NP_724407.1. NM_165427.1.
UniGeneDm.2728.

3D structure databases

HSSPHSSP built from PDB template 1FCH based on UniProtKB P50542.
ProteinModelPortalQ7KJA9.
SMRQ7KJA9. Positions 20-1056.
ModBaseSearch...

Protein-protein interaction databases

IntActQ7KJA9. 7 interactions.
STRINGQ7KJA9.

Protein family/group databases

CAZyGT41. Glycosyltransferase Family 41.

Proteomic databases

PRIDEQ7KJA9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0086084; FBpp0085420; FBgn0261403.
FBtr0086085; FBpp0085421; FBgn0261403.
FBtr0086086; FBpp0085422; FBgn0261403.
GeneID35486.
KEGGdme:Dmel_CG10392.
UCSCCG10392-RA. d. melanogaster.

Organism-specific databases

CTD35486.
FlyBaseFBgn0261403. sxc.

Phylogenomic databases

InParanoidQ7KJA9.
OMANFPDAYC.
OrthoDBEOG4C5B09.
PhylomeDBQ7KJA9.

Gene expression databases

BgeeQ7KJA9.

Family and domain databases

InterProIPR001440. TPR-1.
IPR013026. TPR-contain.
IPR011990. TPR-like_helical.
IPR019734. TPR_repeat.
[Graphical view]
Gene3DG3DSA:1.25.40.10. TPR-like_helical. 2 hits.
KOK09667.
PfamPF00515. TPR_1. 9 hits.
[Graphical view]
SMARTSM00028. TPR. 11 hits.
[Graphical view]
PROSITEPS50005. TPR. 11 hits.
PS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio793667.

Entry information

Entry nameQ7KJA9_DROME
AccessionPrimary (citable) accession number: Q7KJA9
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: January 25, 2012
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)