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Protein
Submitted name:

Glycinin A3B4 subunit

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage proteinUniRule annotation, Storage protein

Names & Taxonomyi

Protein namesi
Submitted name:
Glycinin A3B4 subunitImported
OrganismiGlycine max (Soybean) (Glycine hispida)Imported
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja

Pathology & Biotechi

Protein family/group databases

Allergomei5821. Gly m 6.
5826. Gly m 6.0501.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 517493Sequence analysisPRO_5004287620Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi33 ↔ 66Combined sources
Disulfide bondi109 ↔ 351Combined sources

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA13G18450.2.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1OD5X-ray2.10A/B26-517[»]
2D5FX-ray1.90A/B25-517[»]
2D5HX-ray2.80A/B/C/D/E/F25-517[»]
ProteinModelPortaliQ7GC77.
SMRiQ7GC77. Positions 31-517.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ7GC77.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 249212Cupin_1InterPro annotationAdd
BLAST
Domaini357 – 503147Cupin_1InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7GC77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPFFTLSL SSLCLLLLSS ACFAITSSKF NECQLNNLNA LEPDHRVESE
60 70 80 90 100
GGLIETWNSQ HPELQCAGVT VSKRTLNRNG LHLPSYSPYP QMIIVVQGKG
110 120 130 140 150
AIGFAFPGCP ETFEKPQQQS SRRGSRSQQQ LQDSHQKIRH FNEGDVLVIP
160 170 180 190 200
PGVPYWTYNT GDEPVVAISL LDTSNFNNQL DQNPRVFYLA GNPDIEHPET
210 220 230 240 250
MQQQQQQKSH GGRKQGQHQQ QEEEGGSVLS GFSKHFLAQS FNTNEDTAEK
260 270 280 290 300
LRSPDDERKQ IVTVEGGLSV ISPKWQEQED EDEDEDEEYE QTPSYPPRRP
310 320 330 340 350
SHGKHEDDED EDEEEDQPRP DHPPQRPSRP EQQEPRGRGC QTRNGVEENI
360 370 380 390 400
CTMKLHENIA RPSRADFYNP KAGRISTLNS LTLPALRQFG LSAQYVVLYR
410 420 430 440 450
NGIYSPHWNL NANSVIYVTR GKGRVRVVNC QGNAVFDGEL RRGQLLVVPQ
460 470 480 490 500
NFVVAEQGGE QGLEYVVFKT HHNAVSSYIK DVFRAIPSEV LSNSYNLGQS
510
QVRQLKYQGN SGPLVNP
Length:517
Mass (Da):58,187
Last modified:July 5, 2004 - v1
Checksum:i0440F44C72181B7C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB049440 mRNA. Translation: BAB15802.1.
UniGeneiGma.30723.
Gma.32300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB049440 mRNA. Translation: BAB15802.1.
UniGeneiGma.30723.
Gma.32300.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1OD5X-ray2.10A/B26-517[»]
2D5FX-ray1.90A/B25-517[»]
2D5HX-ray2.80A/B/C/D/E/F25-517[»]
ProteinModelPortaliQ7GC77.
SMRiQ7GC77. Positions 31-517.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA13G18450.2.

Protein family/group databases

Allergomei5821. Gly m 6.
5826. Gly m 6.0501.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.

Miscellaneous databases

EvolutionaryTraceiQ7GC77.

Family and domain databases

Gene3Di2.60.120.10. 3 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 3 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "cDNA of Glycinin A3B4 Subunit."
    Adachi M., Katsube T., Masuda T., Utsumi S.
    Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: CotyledonImported.
  2. Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) OF 26-517, DISULFIDE BONDS.
  3. "Conservation and divergence on plant seed 11S globulins based on crystal structures."
    Tandang-Silvas M.R., Fukuda T., Fukuda C., Prak K., Cabanos C., Kimura A., Itoh T., Mikami B., Utsumi S., Maruyama N.
    Biochim. Biophys. Acta 1804:1432-1442(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 25-517, DISULFIDE BONDS.

Entry informationi

Entry nameiQ7GC77_SOYBN
AccessioniPrimary (citable) accession number: Q7GC77
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2004
Last sequence update: July 5, 2004
Last modified: March 16, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.